Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17l13
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.78
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 28 1.0
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 28 1.4
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 27 3.2
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos... 27 3.2
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 4.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 4.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 4.2
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.5
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 26 5.5
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.3
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 25 9.7
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 25 9.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 9.7
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 25 9.7
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 0.78
Identities = 26/89 (29%), Positives = 40/89 (44%)
Frame = +3
Query: 183 SASISGQSQIIKTTHRLSKLIKDNMKCDGAHEAMLGNDKLAKIAKQKQKESNKQDEYEAL 362
S+S SGQ + + R SK + K D HEA K + K E +K+D+ +
Sbjct: 576 SSSKSGQGSSL--SRRASKH-ESKHKRDSKHEAR-PESKHESHRESKSAEKDKKDKKDKK 631
Query: 363 QSFLRSISSTATLPPYVKGETYSSVRGVF 449
+ RS S + + P K T++ G F
Sbjct: 632 EDSKRSRSHSVSKPDSSKLRTWTDRTGAF 660
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 280 RCSAMTNWRKSLNKSRKNQINRTNTKP 360
R + + NW+ L+K++KN + + N KP
Sbjct: 179 RDNRVGNWQDFLHKTKKNNLKKKNKKP 205
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 336 NKQDEYEALQSFLRSISSTATLPPYVKGE-TYSSVRGVFNQCLI 464
N D + L + LRSI A+LP + K +YS+ F Q L+
Sbjct: 91 NNVDSWNVLTNLLRSIDPEASLPKFDKDSISYSTTIDRFKQNLL 134
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 392 GHITTIRQRRNILFRSGCIQSVPHNMCSVDPCRRCGSSYRFLSDCS 529
GH T Q +NI+ +GC +P SVD SS +F+SD S
Sbjct: 142 GHGDTQWQAKNIIITTGCQPYIPPLYKSVDSPLIVHSS-KFMSDHS 186
>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 183 SASISGQSQIIKTTHRLSKLIKD 251
S S G SQ IKT H + L+KD
Sbjct: 358 SISFKGPSQTIKTHHNVGGLLKD 380
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 259 NAMEPTKRCSAMTNWRKSLNKSRKNQINRTNTKPYRVSC 375
N+M P +C+A T+W + +++ ++ TK + C
Sbjct: 385 NSMNPLTKCAAQTSWIRLIHEFSLSETLTQATKRLTLLC 423
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 120 LKSDFVQNIVNDRSMGLADEPVFTPWRPTA 31
+K++ Q +VN S L D+ TP PTA
Sbjct: 1129 VKAEMTQPVVNQDSHDLQDQLATTPTAPTA 1158
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 120 LKSDFVQNIVNDRSMGLADEPVFTPWRPTA 31
+K++ Q +VN S L D+ TP PTA
Sbjct: 1129 VKAEMTQPVVNQDSHDLQDQLATTPTAPTA 1158
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 264 DGAHEAMLGNDKLAKIAKQKQKESNKQDEYEALQSFLRSISSTATLPPYVKGETYSS 434
D A N+ +A+ A+ K+ E +D Y +S + +++ + PP YSS
Sbjct: 379 DAVKAAEKRNETIAEAARAKENE--AKDLYSKAESITQDLNAKRSHPPQPANLDYSS 433
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 240 LIKDNMKCDGAHEAMLGNDKLAKIAKQKQKESNKQ-DEYEALQSF 371
L+ D + CD + G K+AK +++ KES+ + Y L+ +
Sbjct: 310 LLLDAIVCDPPYGVRAGAKKIAKCSQRPPKESSSTGNHYPKLEQY 354
>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 79
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 267 GAHEAMLGNDKLAKIAKQKQKESNKQDEYE 356
G H+A L N +++ KQ++KE ++ E E
Sbjct: 9 GGHKAALHNPNVSEETKQREKEYLEEHEGE 38
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 382 ILRRKLCRASYSSCLFDSF 326
+LR KLC + C+FD F
Sbjct: 327 VLRSKLCDLYENDCIFDKF 345
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 446 IQSVPHNMCSVDPCRRCGSSYRFLSDCS 529
+Q P +V C RCGS L+ CS
Sbjct: 89 VQDCPEAKDNVSICFRCGSKEHSLNACS 116
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
Frame = -2
Query: 622 PRGVAAE---WILAIQEPISSSVL 560
PR VAA+ W+L+++EP+ S+L
Sbjct: 399 PRKVAADLLTWVLSLKEPLVVSIL 422
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 294 DKLAKIAKQKQKESNKQDEYEALQSFLRSI 383
+KL + K+KQK S + D Y A+ S R +
Sbjct: 96 EKLDAMLKRKQKLSEELDHYRAIISSKREL 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,815
Number of Sequences: 5004
Number of extensions: 59838
Number of successful extensions: 206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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