Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17l13
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.1  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    24   1.1  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   3.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   3.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   4.5  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   6.0  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   6.0  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   7.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 436 TEEYVSPLTYGGNVAVELILRRKLCRASYSSCL 338
           T+  V    YG N  +++ +RRK        CL
Sbjct: 216 TKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCL 248


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 436 TEEYVSPLTYGGNVAVELILRRKLCRASYSSCL 338
           T+  V    YG N  +++ +RRK        CL
Sbjct: 13  TKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCL 45


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 468 CAVLILAAGAG 500
           CAVLI+AAG G
Sbjct: 38  CAVLIVAAGTG 48



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 150 KYHIKIIQCCLKSDFVQNIVNDRS 79
           KY++ II      DF++N++   S
Sbjct: 11  KYYVTIIDAPGHRDFIKNMITGTS 34


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 468 CAVLILAAGAG 500
           CAVLI+AAG G
Sbjct: 54  CAVLIVAAGTG 64



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 150 KYHIKIIQCCLKSDFVQNIVNDRS 79
           KY++ II      DF++N++   S
Sbjct: 27  KYYVTIIDAPGHRDFIKNMITGTS 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 468 CAVLILAAGAG 500
           CAVLI+AAG G
Sbjct: 111 CAVLIVAAGTG 121



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 150 KYHIKIIQCCLKSDFVQNIVNDRS 79
           KY++ II      DF++N++   S
Sbjct: 84  KYYVTIIDAPGHRDFIKNMITGTS 107


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 468 CAVLILAAGAG 500
           CAVLI+AAG G
Sbjct: 111 CAVLIVAAGIG 121



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 150 KYHIKIIQCCLKSDFVQNIVNDRS 79
           KY++ II      DF++N++   S
Sbjct: 84  KYYVTIIDAPGHRDFIKNMITGTS 107


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 361 YRVSCAVSAQRPHYHHTSKEKHTLPFGVYSI 453
           YR+SC +S  +  +  T +    L  G  +I
Sbjct: 65  YRISCLLSIFKQEFDETERASGDLSLGQKTI 95


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 361 YRVSCAVSAQRPHYHHTSKEKHTLPFGVYSI 453
           YR+SC +S  +  +  T +    L  G  +I
Sbjct: 33  YRISCLLSIFKQEFDETERASGDLSLGQKTI 63


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 313 LNKSRKNQINRTNTKPYRVSCAVSAQRPHYHHTSK 417
           +NKS  N   ++++  Y+  CA       Y H+ K
Sbjct: 27  VNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLK 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,981
Number of Sequences: 438
Number of extensions: 4060
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)