Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17l10
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    30   0.23 
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    30   0.23 
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   2.1  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   6.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.5  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   6.5  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    25   8.6  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -3

Query: 595 FYQLRDKTHTLHXVLQSYRTVLWILFVIAYSFYVLTCGFLSSKFNV 458
           FY+L +    +  ++ S+   L I+F+I YS  +L+  F+ SKF++
Sbjct: 6   FYELYN-IKNIRPLIPSFHVCLLIMFLILYSQEILSFFFMCSKFSM 50


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 526 ILFVIAYSFYVLTCGFLSSKFNV 458
           I F+ AY F +LTCGF++   N+
Sbjct: 234 IAFIQAYVFAILTCGFINDSLNL 256


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 578 QNTYLTHXLTELSNSLVDSVCDCLLIL 498
           +NT + H   EL+NS++D VCD L  L
Sbjct: 359 KNTSVPH---ELANSIIDYVCDALAAL 382


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 553 LQSYRTVLWILFVIAYSFYVLTCGFLSSKFN 461
           L  +R + W+ FV+++       G++ SKF+
Sbjct: 117 LSIWRFLYWLTFVLSWIILPFVQGYMESKFS 147


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = -2

Query: 437 FKIANYQCYSTFSLRVTASLLETCFEKNFIHLLKACMEQNNTKIIFHF*MFKNNTQKSFT 258
           F I N  C     L + +S L       F H   +   Q+  K I+       +T +SF+
Sbjct: 189 FSILNSPCSD---LCLNSSSLANYLHGCFYHNTLSHPYQDALKFIYEIGDDLEDTFRSFS 245

Query: 257 ALLFHSLFINISK 219
            L  HSL I +SK
Sbjct: 246 FLELHSLAIKLSK 258


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -1

Query: 501 FMF*LAAFFRVNLMFWFLWVNFQNSKLS--MLFNIQSQSNSFVTRN--VL*KKLYTFA*S 334
           F + +AAF+R + M W +++       S  ++  I    N+ +T +  VL  KL  FA S
Sbjct: 80  FTYFVAAFYRSSRMPWIIFIVILGHTFSSHVIRYIYPSENTDITASQMVLCMKLTAFAWS 139

Query: 333 LY 328
           +Y
Sbjct: 140 VY 141


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 532 LW-ILFVIAYSFYVLTCGFLSSKFNVLVPLGE 440
           LW I+++    F    C  LS   NV+ P+GE
Sbjct: 191 LWSIVYLHVIWFLYYACWILSEGLNVISPIGE 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,350
Number of Sequences: 5004
Number of extensions: 49642
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)