Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17l10
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1163 - 9881721-9883169                                           30   1.7  
04_04_0443 - 25253425-25253679,25254072-25254131,25254259-252543...    28   5.1  
03_01_0324 - 2525712-2525897,2526181-2526288,2526330-2526421,252...    27   8.9  

>06_01_1163 - 9881721-9883169
          Length = 482

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 120 VSYGLKNVFLFSLGNNYYV*KLIKQNLGRYLE 215
           VS G+KN FL ++G++  V    +Q  GRYLE
Sbjct: 208 VSEGVKNNFLSNMGSSCIVSNTFRQLEGRYLE 239


>04_04_0443 -
           25253425-25253679,25254072-25254131,25254259-25254365,
           25256594-25256667,25256865-25256998,25257233-25257304,
           25257453-25257522,25257602-25257675,25258403-25258574,
           25258910-25258934,25259358-25259517,25259730-25259788,
           25259908-25260079
          Length = 477

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 610 IVLWVFYQLRDKTHTLHXVLQSYRTVLWILFVIAYSFYVL 491
           I  WV +     T  LH V  S+ +  WIL  + Y+  ++
Sbjct: 78  IFFWVMFATTFGTRKLHEVRNSWHSGCWILKFLVYAVSII 117


>03_01_0324 -
           2525712-2525897,2526181-2526288,2526330-2526421,
           2527861-2528038
          Length = 187

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 340 LKLVWNKIIQKLYFIFKCLKIIPKNHSPR 254
           +KL WN  ++K  F+F  L + P +H+ R
Sbjct: 105 VKLAWNAKMKKEQFLFMMLVLEPLHHAAR 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,279,132
Number of Sequences: 37544
Number of extensions: 227298
Number of successful extensions: 433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)