Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17l10
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37430-5|AAB52674.2|  389|Caenorhabditis elegans Set (trithorax/...    28   4.6  
AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical ...    28   4.6  
AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical ...    28   4.6  
U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    27   8.0  

>U37430-5|AAB52674.2|  389|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 12
           protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 129 GLKNVFLFSLGNNYYV*KLIKQNLGRYLEFF*NIN 233
           G+K+ + F +G NYYV    K N  R++    N N
Sbjct: 146 GIKHSYSFEVGRNYYVDPTRKGNSARFINHSCNPN 180


>AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical
           protein C17E7.9a protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -3

Query: 535 VLWILFVIAYSFYVLTCGFLSSKFNVLVPLGEFSK*QIINVIQHSVSE 392
           ++WI+   A +F V+TC   +S+  VL    +  +  + N+ + +V E
Sbjct: 204 IIWIIVTFAIAFCVMTCSLWNSEILVLKKTEDSRQFGMQNLARENVHE 251


>AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical
           protein C17E7.9b protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -3

Query: 535 VLWILFVIAYSFYVLTCGFLSSKFNVLVPLGEFSK*QIINVIQHSVSE 392
           ++WI+   A +F V+TC   +S+  VL    +  +  + N+ + +V E
Sbjct: 176 IIWIIVTFAIAFCVMTCSLWNSEILVLKKTEDSRQFGMQNLARENVHE 223


>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = -2

Query: 140 IFQTITHNLTLLF------NHLKFCHKFFIITFHVFCFMKF 36
           IF +I  +LT LF      N+L FC+  F+ +    CF  F
Sbjct: 361 IFGSILPSLTTLFDKQKTSNNLNFCYLNFLCSLEFLCFKSF 401


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = -3

Query: 346 ICLKLVWNKIIQKLYFIFK---CLKIIPKNHSPRCYFTVYSLIFQKNSKYLPKFCFINF 179
           + L  V+ + +  L F F        +P   SP         ++  NS +LP  C INF
Sbjct: 399 LVLLAVFKRALPALQFPFSPDSFFTFVPAGSSPHLLHKSLKSVYYINSLFLPFLCIINF 457


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,431,124
Number of Sequences: 27780
Number of extensions: 272692
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)