Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17l09
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    28   1.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   3.1  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    26   4.1  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   5.4  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 428 SNDCITRLKQHQKCLNCIYAIATYEHTFVQQIKGI 532
           SN+ IT+ +    CL  IY  +TY  T ++ IK +
Sbjct: 570 SNNFITKARLGFHCLQMIYRESTYYSTIMEAIKNL 604


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +2

Query: 437  CITR---LKQHQK-CLNCIYAIATYEHTFVQQIKGIK 535
            CIT+   L  +QK CL+C+  +   EH  ++ +K +K
Sbjct: 1352 CITKFAKLNGNQKFCLSCVDMLKNLEHELIKHLKHMK 1388


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -1

Query: 619 FPLLLCYWTSSIQTVFXTSSCFRITIPLFNTF---DLLHKGVFIRRYSVDAVKTLLMLF 452
           + LL CY+  S + +   SS F  T+P+ +TF    + +  +     +VD  K++  LF
Sbjct: 462 YALLCCYYIYSYKLI-PHSSIFVYTVPIISTFLFPMVTYAALRFGEVAVDIYKSIRPLF 519


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 409 VVNFATLKRLHYPFETTSKVS 471
           +++F T    HYPFE+T+ +S
Sbjct: 380 IIDFGTAFVFHYPFESTTLMS 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,698
Number of Sequences: 5004
Number of extensions: 45740
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)