Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17l09
(649 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 23 2.5
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 23 2.5
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.5
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 2.5
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 2.5
AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein. 22 4.4
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 5.9
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 5.9
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 5.9
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 21 7.8
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 21 7.8
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 21 7.8
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 21 7.8
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 23.0 bits (47), Expect = 2.5
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 263 NPITYFTFTASRILLPKNNLLILGNNEFAYSHEPCLDITEDAVICR 400
+P T T S I K N I G+ F YS E L E ++ R
Sbjct: 566 SPFTTSTIMPSDIFYDKLNKAIGGSEPFTYS-EKMLGFPERLILPR 610
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 23.0 bits (47), Expect = 2.5
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 263 NPITYFTFTASRILLPKNNLLILGNNEFAYSHEPCLDITEDAVICR 400
+P T T S I K N I G+ F YS E L E ++ R
Sbjct: 566 SPFTTSTIMPSDIFYDKLNKAIGGSEPFTYS-EKMLGFPERLILPR 610
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 2.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 510 LCNKSKVLNSGIVILKQEEVXKTVCIDDVQ 599
L K+ V SG+V+ + V K+ C DV+
Sbjct: 129 LMTKATVYYSGLVVWQPPAVYKSSCSIDVE 158
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.0 bits (47), Expect = 2.5
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 257 ATSGICIIYLIFF 219
A SG C+++L+FF
Sbjct: 449 AVSGFCLLFLMFF 461
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.0 bits (47), Expect = 2.5
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 257 ATSGICIIYLIFF 219
A SG C+++L+FF
Sbjct: 502 AVSGFCLLFLMFF 514
>AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein.
Length = 104
Score = 22.2 bits (45), Expect = 4.4
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +2
Query: 335 NNEFAYSHEPCLDITEDAVICRHL----EW*TLLHSNDCITRLKQHQKCLNC 478
+ E S+EP L + V C L +W ++ HS I L Q +K +C
Sbjct: 44 DTELMDSNEPLLPLRHRRVTCDVLSWQSKWLSINHSACAIRCLAQRRKGGSC 95
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 534 NSGIVILKQEEVXKTVCI 587
NSG+V + Q+E VC+
Sbjct: 243 NSGVVHVAQDESTSLVCV 260
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 534 NSGIVILKQEEVXKTVCI 587
NSG+V + Q+E VC+
Sbjct: 243 NSGVVHVAQDESTSLVCV 260
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 5.9
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 242 CIIYLIFFSIYFRCCNHI 189
C+I+L F +YF N++
Sbjct: 858 CVIWLAFVPLYFGTGNNV 875
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -1
Query: 298 SRCSKGEVGYR 266
SRC++G+V YR
Sbjct: 19 SRCTQGKVNYR 29
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -1
Query: 298 SRCSKGEVGYR 266
SRC++G+V YR
Sbjct: 19 SRCTQGKVNYR 29
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 21.4 bits (43), Expect = 7.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 242 CIIYLIFFSIYF 207
CII+L F IYF
Sbjct: 716 CIIWLAFVPIYF 727
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 21.4 bits (43), Expect = 7.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 242 CIIYLIFFSIYF 207
CII+L F IYF
Sbjct: 806 CIIWLAFVPIYF 817
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,699
Number of Sequences: 438
Number of extensions: 3381
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -