Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17l08
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 36 0.005
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 31 0.14
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 30 0.19
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 29 0.33
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.57
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 28 0.76
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.00
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 28 1.00
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 2.3
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.3
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 2.3
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 2.3
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 26 3.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.0
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 26 3.0
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 26 4.0
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 4.0
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 5.3
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 5.3
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 25 7.0
SPBC216.06c |swi1||replication fork protection complex subunit S... 25 7.0
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 25 7.0
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.3
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 9.3
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.3
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 35.5 bits (78), Expect = 0.005
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Frame = +3
Query: 210 EDEW---NYYKGEGEREEKNASEEPEEQPRSETPCQDNS----GWESSSVDMNSSPLNPD 368
+ EW N + G + P++ + T D+ E + +D LNP
Sbjct: 1283 QPEWVSFNSFSGTVRPSNSEKLQRPQQLSVAATSAVDSKTASISEEQAKIDKQKVALNPS 1342
Query: 369 APVFVPGSAATDVLLAESPRKPL 437
AP FVP S +D + +E+ K L
Sbjct: 1343 APEFVPDSTPSDAVASETDNKNL 1365
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 183 NVAESGEDSEDEWNYYKGEGEREEKNASEEPEEQPRSETPCQDNSGWESS 332
+V E +D EDE +GE E EE+ E+PE ET + N E S
Sbjct: 261 SVLEEDDDDEDEDEELEGEKEEEEEE-KEKPEISNYDETEGKVNFSLEDS 309
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 30.3 bits (65), Expect = 0.19
Identities = 23/91 (25%), Positives = 37/91 (40%)
Frame = +3
Query: 105 TGEDYNLYSEITVHVEEGHVDGALVDNVAESGEDSEDEWNYYKGEGEREEKNASEEPEEQ 284
T D + Y++ HV + DG D+ + E +DE + ER+E EE E+
Sbjct: 201 TSTDSSQYNDQDDHVYDDTNDGT--DDDINNNEYKDDESSSGSESYERDEDVDEEEEEDD 258
Query: 285 PRSETPCQDNSGWESSSVDMNSSPLNPDAPV 377
+ D E+ + + NP A V
Sbjct: 259 DENNDEGDDEDENENDELRSENGSPNPSAAV 289
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 29.5 bits (63), Expect = 0.33
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 210 EDEWNYYKGEGEREEKNASEEPEEQPRSE--TPCQDNS 317
E NY GE E EEKNAS + E + CQ +S
Sbjct: 328 ERSMNYVFGESELEEKNASTKTENDSNEDDKEECQSSS 365
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 0.57
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +3
Query: 96 IITTGEDYNLYSEITVHVEEGHVDGALV--DNVAESGEDSEDEWNYYKGEGEREEKNASE 269
I+ T E SE + E + A+V + ES DS E + E E E ++
Sbjct: 127 IVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESS--SSESESESSSSES 184
Query: 270 EPEEQPRSETPCQDNSGWESSSVDMNSS 353
E EE+ +T + ESSS +SS
Sbjct: 185 EEEEEVVEKTEEKKEGSSESSSDSESSS 212
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 28.3 bits (60), Expect = 0.76
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 192 ESGEDSEDEWNYYKGEGEREEKNASEEPEEQPRSET 299
+ GE++E+EW+ +G+ +E +++ E SE+
Sbjct: 489 QDGEEAEEEWHGISDDGKADESESTKPVAEGSASES 524
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.9 bits (59), Expect = 1.00
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +3
Query: 132 EITVHVEEGHVDGALVDNVAESGEDSEDEWNYYKGEGEREEKNASEEPEEQPRSETPCQD 311
++ V GH +VD V+ E+ + KGEG+R + + ++
Sbjct: 81 QLNVSKNNGHKASDIVDAVSSKDEELR---KHAKGEGKRSKNRKRSSKHSEKQAVDLKSS 137
Query: 312 NSGWESSS 335
NS E+SS
Sbjct: 138 NSSQETSS 145
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.9 bits (59), Expect = 1.00
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +3
Query: 165 DGALVDNVAESGEDSEDEWNYYKGEGEREEKNASEEPEEQPRSETPCQDNSGWESSSVD 341
+ +V + +G+ +ED + GEG + N +EE ++ + +N E S+ D
Sbjct: 3 ENEVVGSPTTNGDKNEDGYPAENGEGTNVDDNNNEEEKDGIPLDNDNDENDSSEESATD 61
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = +3
Query: 129 SEITVHVEEGHVDGALVDNVAESGEDSEDEWNYYKGEGEREEKNASEEPEEQPRSETPCQ 308
SEIT + E + + E+SEDE Y GE + E SET Q
Sbjct: 99 SEITDNEEVASASSKSTKSEELTDEESEDEEVYDPARGEGIISTSESSDESDAESETEAQ 158
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 408 LLAESPRKPLPMDDIDLPDV 467
LL E+P PLP DD +L D+
Sbjct: 744 LLLENPNYPLPKDDHELEDM 763
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 264 SEEPEEQPRSETPCQDNSGWESSSVDMNSSPLN---PDAPVFVPGSA 395
+++ + QP+S+ Q + ++ SV N P+N P+A VPG A
Sbjct: 732 NQQQQPQPQSQQQQQASQFPQAPSVSSNVRPINGSIPNAQPSVPGQA 778
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 153 EGHVDGALVDNVAESGEDSEDEWNYYKGEGEREEKNAS---EEPEEQPRS 293
EG DG ++ S E+ E+E + + E E NAS E+PEE+P +
Sbjct: 211 EGDGDGEGENDGKGSEEEEEEEIDIEEEEEESALANASAAEEKPEEKPET 260
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Frame = +3
Query: 216 EWNYYKGEGEREEKNASEEPEEQPRSETPCQDNSGWESSSVDMNSSPLNPDAPVFVPGSA 395
+W + ++E KNA+ ++P S+ S +S+ V + + V V G +
Sbjct: 58 QWTEENLKTQKELKNAAISTRQKPTSKKSASSTSKHDSTGVKTSGKRSRESSTVTVDGDS 117
Query: 396 --ATDVLLAESPRKPLPMDDIDLPDVTQFRTEAVVRP 500
+ + P+P + T + E +P
Sbjct: 118 HELPSRIKTQKSESPIP-QQVKRDGTTDAKNEETTKP 153
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 481 VRNCVTSGRSISSIGNGLRGDSASNTSVA-ALPGTNTGA 368
++ T+ RS +G G+ G+ SNT + A P TGA
Sbjct: 41 LKKATTNDRSAPVVGGGVVGERKSNTPKSFAAPPVPTGA 79
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 237 EGEREEKNASEEPEEQPRSETPCQDNSGWESSSVDMNSSPLNPDAPVFVP 386
E +R ++N+ ++ P + DNS + NSSP+ P +F P
Sbjct: 194 ESDRFKRNSQSLSQQSPLLDVHSPDNSNHRTMLNINNSSPIKP-KKIFKP 242
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 315 SGWESSSVDMNSSPLNP 365
SGW +S+ D +S P+NP
Sbjct: 250 SGWVASAGDFHSPPINP 266
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 4.0
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 156 GHVDGALVDNVAESGEDSEDEWNYYKGEGEREEKNASEE-PEEQPRSETPCQDNSGWE-S 329
G G +V+ E+ EDSED+ Y + E E ++ +++ E + DN
Sbjct: 1843 GIFQGDIVNENDENYEDSEDDGVYEEMEFEDDQSGSADSVVSEDDADDVMYSDNDDMNIE 1902
Query: 330 SSVDMNSSPLNPDAPVFVPGSAATDVL 410
VD + D F S+ DV+
Sbjct: 1903 FMVDEQDASSQNDDSSFDEASSHGDVI 1929
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.4 bits (53), Expect = 5.3
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +3
Query: 165 DGALV-DNVAESGEDSEDEWNYYKGEGEREEKNASE--EPEEQPRSETP 302
DG+ V D +A+ EDSEDE + E + +K+ S+ + EE+ E P
Sbjct: 1379 DGSTVFDKLADDTEDSEDE----EDEEPKRKKSKSDRFDDEEKDLDEIP 1423
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 180 DNVAESGEDSEDEWNYYKGEGEREEKNASEE 272
+++A++ E E+EWN ++ E E+NA E+
Sbjct: 81 ESIAKNKELIEEEWNDFQNEIGIIEENAVEQ 111
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = -1
Query: 523 LSKSRSSAGRTTASVRNCVTSGRSISSIGNGLRGDSASNTSVAALPGTNTGASG 362
+++++ S S+RN + S NG S S L + TG+ G
Sbjct: 331 INRAKQSTTNKNDSLRNTAVESSTEPSTSNGFPATSVSPPLTIDLTNSQTGSDG 384
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 150 EEGHVDGALVDNVAESGEDSEDEWNYYKGEGEREEKNASE 269
+E H+ A + +S +DSE + +++ E EKNA +
Sbjct: 904 KENHLRSAKY--IVDSDDDSETDIAFFQSEAALREKNAQK 941
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 246 REEKNASEEPEEQP-RSETPCQDNSGWESSSVDMNSSPLNPDAPV 377
+E N+ +E +QP ++T +DNS E ++++ + D PV
Sbjct: 13 KESHNSIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYKSNDEPV 57
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 273 PEEQPRSETPCQDNSGWESSSVDMNSSPLN 362
PE E+P D + E+S D ++SP N
Sbjct: 147 PETNCHKESPLSDETVSETSKNDTSNSPTN 176
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 24.6 bits (51), Expect = 9.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 327 SSSVDMNSSPLNPDAPVFVPGSAATDVLLAESPRKPL 437
SS + ++S L+P A + GSA D L+ SP+K +
Sbjct: 564 SSETESDASILSPSAAIPKSGSAIKDELI--SPKKEI 598
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 24.6 bits (51), Expect = 9.3
Identities = 15/72 (20%), Positives = 31/72 (43%)
Frame = +3
Query: 159 HVDGALVDNVAESGEDSEDEWNYYKGEGEREEKNASEEPEEQPRSETPCQDNSGWESSSV 338
H++ + + ++ + E + + E + E K+ +EPE + + + G SSS
Sbjct: 184 HLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKVGQPSSSD 243
Query: 339 DMNSSPLNPDAP 374
D + D P
Sbjct: 244 DKAKGSTSKDQP 255
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,964
Number of Sequences: 5004
Number of extensions: 41874
Number of successful extensions: 202
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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