Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17l02
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    34   0.022
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   3.3  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   4.4  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   4.4  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.8  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.7  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
 Frame = +3

Query: 393 NYCEMDWHNYHRLHVIYAFMENLSHEYPYLCSVAVIGKSAEGRDIKILKVSNGNEYNVG- 569
           ++ ++ + +Y  L  I +++  ++  Y  L  +  +G +AEGR I  LK++  +  + G 
Sbjct: 174 SFTDIFFKSYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGE 233

Query: 570 -------VWLDAAIHPREWISTAVVTYIADRLVRTF 656
                  + +    H REWI    V Y A +L+  +
Sbjct: 234 KIRNKKVIIIQGGSHAREWIGIPSVCYAAWQLLAKY 269


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 144 VWEVRFIREGQRRFVKSLDTHGAITIWKEENSTM 245
           V +VR+I  G  RF+ +    G + +W   N ++
Sbjct: 394 VSDVRYIESGVNRFIATSGYDGCVKLWNPLNCSL 427


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/66 (22%), Positives = 27/66 (40%)
 Frame = +3

Query: 372  SKNNRKPNYCEMDWHNYHRLHVIYAFMENLSHEYPYLCSVAVIGKSAEGRDIKILKVSNG 551
            S+  R+      DW  YH  +++    +  S + PY   +  + +S +    K L    G
Sbjct: 897  SRTQREEYLYGEDWEAYHSANLLTHIGQAFSRDQPYKIYIQDVMRSTKDMLKKALMDEGG 956

Query: 552  NEYNVG 569
            + Y  G
Sbjct: 957  SFYLCG 962


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 218 CYRSMCIQ*FNKTPLSFSNKSHFPYLSI 135
           C+RS+ +  +N  P  F  + H  YL++
Sbjct: 202 CFRSLALSGWNPVPAEFVIQGHLLYLTV 229


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 297 EREIPYSIAIGDVGSVLSREQGIKYSKNNRKPN 395
           ER +P   A+G+ GS   +E+ +KYS   +  N
Sbjct: 136 ERTLPVIEALGNWGSESLKERSLKYSNRLQASN 168


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 80  CCFFLIYILRLYK 42
           CCF +I+ +RLY+
Sbjct: 626 CCFIIIFFMRLYR 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,859
Number of Sequences: 5004
Number of extensions: 60295
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)