Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17l01
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    29   0.23 
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    25   4.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    24   6.5  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    24   6.5  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    24   8.6  

>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 166 VLVTICYNISSFRFFYALSVLIFYLSIPKIIRNLVNYIFL 47
           ++V   +N S F    +L   I YLS+P  + N +NY+F+
Sbjct: 203 LVVVTSHNPSPFESLRSLINSIPYLSLPAFVFNDINYLFV 242


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 26  DDRRFRLQKNVINQISNYFRNT*IKDQHRESVKE 127
           +DR F+L   + +Q  N  R   ++  + E +KE
Sbjct: 60  NDRPFKLYLGIFSQAKNVDRRNFLRTDYNEYIKE 93


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 163  LVTICYNISSFRFFYALSVLIFYLSIPKIIRNL 65
            L +ICYN+     +++L VL   +S    I NL
Sbjct: 2322 LTSICYNVGRNHPYHSLHVLFSLVSNVPEIENL 2354


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 251 NIFFSIISNRIKLYYAHLNLLNSKYNSISVSYNLL 147
           N+F  ++ N + +Y A L     + N++    N+L
Sbjct: 661 NLFHDLVVNELHVYQALLEDAEKRNNNLKAELNIL 695


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 278 TLVHLFNYLNIFFSIISNRIKL 213
           TLVH F  L+ FFS+  + + L
Sbjct: 239 TLVHAFQDLDAFFSLAKDTMSL 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,147,306
Number of Sequences: 5004
Number of extensions: 19309
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)