Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17k16
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   106   2e-23
Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z72512-3|CAA96665.2|  310|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  106 bits (254), Expect = 2e-23
 Identities = 52/145 (35%), Positives = 89/145 (61%)
 Frame = +3

Query: 207 QVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFIGDT 386
           +V+++GAA  IG  + L LK++  V+ L LYD  +   G   +LS++     V+A  G  
Sbjct: 30  KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNT-PGVAADLSHIDSNAKVTAHTGPK 88

Query: 387 NLEQAIHSSNLVVMVSRMPRKPGNTREQMLGANAPLIQRLCKAIAAQNQEAFVAISTNPI 566
            L  A+ +++++V+ + +PRKPG TR+ +   NA +++ L   IA  + +A +AI TNP+
Sbjct: 89  ELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPV 148

Query: 567 NYLIPFASTVMYKYGCYNPSKMFGI 641
           N  +P AS V+ K G Y+P ++FG+
Sbjct: 149 NSTVPIASEVLKKAGVYDPKRVFGV 173


>Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical protein
            C26H9A.2 protein.
          Length = 1334

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 25/101 (24%), Positives = 53/101 (52%)
 Frame = +3

Query: 57   RNKKVTKIVKCDVKKHILQKY*KKMAQKIFCCLFATQLKKNTLILQKRNVQVSVIGAASD 236
            RN+++  + + D+ KH+L     ++A+K+F       L +N ++LQ     +  +   S 
Sbjct: 876  RNQQI--MCQVDMPKHLL-----RIAEKLF-------LTENHILLQPFYYLLERLSYQSL 921

Query: 237  IGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGP 359
              + +  FL+ +S +    L DD+D    +++E+++  GGP
Sbjct: 922  TPNQLRSFLRLDSPLCCRSLDDDEDDDDDSKIEIADNEGGP 962


>Z72512-3|CAA96665.2|  310|Caenorhabditis elegans Hypothetical
           protein R07B5.5 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 141 IFCCLFATQLKKNTLILQKRNVQVSVIGAA 230
           ++CC F  + +KN +++QK  +   ++GAA
Sbjct: 189 VYCCAFKNKTEKN-IMIQKAILNTVIVGAA 217


>AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical
           protein T12B3.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 201 NVQVSVIGAASDIGSYVSLFLKRNSKVSKLHLYDDDDRI 317
           NV V V+G+A+ + SY  L   +   +  +H+ DDD+ +
Sbjct: 428 NVTVIVLGSANLLISYFFLPESKGVNLDDVHVNDDDENV 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,736
Number of Sequences: 27780
Number of extensions: 321287
Number of successful extensions: 912
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)