Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17k16
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.62 
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   3.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.8  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 639 FQTFWTDCNTRIYTLQYLQKVSDNLWG 559
           F   + D   ++Y   + Q+ S NLWG
Sbjct: 463 FAQLFADRGMKVYYYFFTQRTSTNLWG 489


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/31 (25%), Positives = 13/31 (41%)
 Frame = -2

Query: 166 CVANKQQNIFWAIFFQYFCKICFLTSHFTIF 74
           C +    N+FW     YF  +     H++ F
Sbjct: 29  CTSLNLSNLFWLFVGTYFPSLIGANEHYSKF 59


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 92  ITFYYFCDFFIAWS*YLL*VLIGV 21
           + F  F  F +AW+ Y    LIGV
Sbjct: 283 VAFTIFFLFLLAWTPYATVALIGV 306


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 92  ITFYYFCDFFIAWS*YLL*VLIGV 21
           + F  F  F +AW+ Y    LIGV
Sbjct: 283 VAFTIFFLFLLAWTPYATVALIGV 306


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 563 GVGRYSYKRFLILSCNG 513
           G   Y  +R LILSC G
Sbjct: 172 GTVNYLMRRHLILSCQG 188


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 563 GVGRYSYKRFLILSCNG 513
           G   Y  +R LILSC G
Sbjct: 172 GTVNYLMRRHLILSCQG 188


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 563 GVGRYSYKRFLILSCNG 513
           G   Y  +R LILSC G
Sbjct: 223 GTVNYLMRRHLILSCQG 239


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 563 GVGRYSYKRFLILSCNG 513
           G   Y  +R LILSC G
Sbjct: 172 GTVNYLMRRHLILSCQG 188


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 234 DIGSYVSLFLKRNSKVSKLHLYDDDDRIKGTELELSNLPGGPSVSAFIGDTN 389
           DI S++S      + VS  +  D D+ +  T   L  +P G SV +  G+ N
Sbjct: 346 DIDSHMS----DRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENN 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,897
Number of Sequences: 438
Number of extensions: 3836
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)