Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17k15
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0298 + 1998278-1998655,1998836-1999111,1999203-1999271,199...    36   0.023
12_02_0179 - 14952398-14952511,14953333-14953356,14953543-149536...    28   6.1  
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159...    28   6.1  

>02_01_0298 +
           1998278-1998655,1998836-1999111,1999203-1999271,
           1999881-2000073,2000161-2000555
          Length = 436

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 514 YKDHTPVMLNEALK-YLKPQDGELYVDMTFGAGGHSRKILES 636
           + +H PVML E L  + +P     +VD T GA GHS  ++E+
Sbjct: 89  HAEHVPVMLGEVLAAFRRPLPLRSFVDCTLGAAGHSLAMMEA 130


>12_02_0179 -
           14952398-14952511,14953333-14953356,14953543-14953670,
           14953765-14953891,14953930-14954013,14954245-14954397,
           14954478-14954579,14955036-14955128,14955289-14955350,
           14955395-14955522,14957053-14957291,14958040-14958471,
           14958774-14958912,14960564-14960883
          Length = 714

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +2

Query: 167 KGDRDLGKFIRDRVKFVFESPEKHNLDSEYCNRQYQALNRLADNHYRNKYKRT---KSST 337
           + D  + K     V  VF    + N++   C++ +QAL + +  H   + K T   +S+ 
Sbjct: 104 RSDSAVFKLAEKDVGCVFAKTGEVNIEKIKCSKYFQALLQKSKGHAAEQMKTTDCQESTI 163

Query: 338 ATGLSTEECNLILSNEVLA 394
             G   EE +  + NE L+
Sbjct: 164 EEGPHVEENSTDMENEKLS 182


>07_01_0214 +
           1595917-1596526,1597127-1597140,1598414-1598743,
           1598853-1598963,1599113-1599269,1603366-1603619,
           1603762-1603960,1604341-1604498
          Length = 610

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 481 FRRTYCTEYVKYKDHTPVMLNEALKYLKPQDGEL--YVDMTFGAGGHSRKIL 630
           F   YC    KY++     ++EA+++LK  + +L        G G  S ++L
Sbjct: 354 FMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLL 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,921,624
Number of Sequences: 37544
Number of extensions: 278492
Number of successful extensions: 668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)