Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17k09
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0334 + 16779883-16780150,16780618-16781828                       29   4.3  
02_04_0298 - 21733620-21733805,21733900-21734025,21734128-217342...    28   5.6  
02_02_0532 + 11227074-11227349,11227567-11227969,11228228-112285...    28   5.6  
12_02_0338 - 17712076-17712261,17712339-17712431,17712533-177125...    27   9.9  
11_06_0592 - 25327128-25329566                                         27   9.9  
10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010           27   9.9  

>09_04_0334 + 16779883-16780150,16780618-16781828
          Length = 492

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 117 VKSLNFKMCNVQKFLSKK---TIYGPRKEPVWVYLEKEM 224
           V   + + C ++K  S     T Y PR    W YLEKE+
Sbjct: 436 VYQYDIQTCRMEKIASGVEDFTCYDPRNNKYWAYLEKEV 474


>02_04_0298 -
           21733620-21733805,21733900-21734025,21734128-21734213,
           21734751-21734866,21734951-21735628,21736080-21736105
          Length = 405

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 270 WLKFLRDLHYYFYRESYDMNAMILMSSMVFIDLEECIQKL 389
           WL F  DLH  + RE  D+N +     M ++D E+  Q +
Sbjct: 210 WLDFA-DLHAIYRREKMDINFVAAWCLMQYMDAEKTKQSI 248


>02_02_0532 +
           11227074-11227349,11227567-11227969,11228228-11228506,
           11228736-11228838,11228932-11229013,11229260-11229370,
           11229621-11229691,11229791-11229803
          Length = 445

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 270 WLKFLRDLHYYFYRESYDMNAMILMSSMVFIDLEECIQKLEKLTDIKNIPPAKSKKKQRR 449
           WL F  DLH  + RE  D+N +     M ++D +E  + +  L  I+      ++     
Sbjct: 329 WLDF-EDLHAIYRREKMDVNYVAAGCLMQYMDAKEKKELIGFLDPIRICQTQHTRSLHLF 387

Query: 450 NFQPDVR 470
           N  P+ R
Sbjct: 388 NHLPEAR 394


>12_02_0338 -
           17712076-17712261,17712339-17712431,17712533-17712593,
           17712681-17712791,17712872-17713123,17713207-17714543,
           17714649-17715317,17715403-17715642
          Length = 982

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 249 YNEKVGAWLKFLRDLHYYFYRESYDMNAMILMSSMVFIDLEE 374
           + E+   WL FL DLH  + R+  D+N + +   M ++D ++
Sbjct: 717 FGEEGYVWLDFL-DLHAIYRRDKMDVNYVGVWCMMQYMDAKK 757


>11_06_0592 - 25327128-25329566
          Length = 812

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 240 KKPYNEKVGAWLKFLRDLHY 299
           K P+N+++ AW+K +RD+ Y
Sbjct: 55  KTPHNDQLRAWMKQVRDVTY 74


>10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010
          Length = 520

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +3

Query: 342 MSSMVFIDLEECIQKLEKLTDIKNIPPAKSKKKQRRNFQPDVRYGEYLQRCYVPFYSNHG 521
           MSS     +E  I KL+K  ++      K +KK++R  +   + GE  +      +S HG
Sbjct: 16  MSSAAAAAVEPGIDKLQKEREMMQKKEKKERKKEKRRQKKAAQLGEKYET--DDHHSKHG 73

Query: 522 SGQKK 536
             ++K
Sbjct: 74  HKKRK 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,478,751
Number of Sequences: 37544
Number of extensions: 268144
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)