Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17k09
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-3|CAB60491.1|  346|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    29   3.8  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     29   3.8  
Z74042-5|CAA98530.1|  200|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   5.0  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   5.0  
Z93381-6|CAB07609.1|  724|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z83218-8|CAB05693.1|  724|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    27   8.8  
AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AL132859-3|CAB60491.1|  346|Caenorhabditis elegans Hypothetical
           protein Y39C12A.6 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 258 FHCTAFCQYFVSFPSPNIPKPVLFVVHKLSF 166
           F CTA C  F+ + S  + + ++FVV  LSF
Sbjct: 233 FTCTA-CALFIQYDSSPLHREIMFVVFDLSF 262


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
 Frame = +3

Query: 219 EMKQNIDKKPYNEKVGAWLKFL---RDLHYYFYRESYDMNAMILMSSMVF-------IDL 368
           E+K  I  +P  E+V  W+K L     +  +    S+    +I  S   +       IDL
Sbjct: 441 ELKLQILDRPEQERVSKWIKSLSLRSSISEFSSEHSHSTVTVIEHSEKTYELEQNVRIDL 500

Query: 369 EECIQKLEKLTDIKNIPPAKSKKKQRR 449
           EE + KLEK   I+ +   +SKKKQ +
Sbjct: 501 EETL-KLEK--RIEEVSIEESKKKQEK 524


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 189 KEPVWVYLEKEMKQNI--DKKPYNEKVGAWL 275
           K+P W YL++  +Q +    +PY+ K   W+
Sbjct: 7   KDPGWQYLKRSREQQLADQSRPYDSKKNVWI 37


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 189 KEPVWVYLEKEMKQNI--DKKPYNEKVGAWL 275
           K+P W YL++  +Q +    +PY+ K   W+
Sbjct: 7   KDPGWQYLKRSREQQLADQSRPYDSKKNVWI 37


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 189 KEPVWVYLEKEMKQNI--DKKPYNEKVGAWL 275
           K+P W YL++  +Q +    +PY+ K   W+
Sbjct: 7   KDPGWQYLKRSREQQLADQSRPYDSKKNVWI 37


>Z74042-5|CAA98530.1|  200|Caenorhabditis elegans Hypothetical
           protein T11F9.6 protein.
          Length = 200

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 279 FLRDLHYYFYRESYDMNAM-ILMSSMVFIDLEECIQ 383
           F   +HYYFY E++D      ++ +M  I    CI+
Sbjct: 55  FNNTVHYYFYEENFDFTVKESILRAMELISNHTCIK 90


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 363 DLEECIQKL-EKLTDIKNIPPAKSKKKQRRNFQPDVRYGEYLQRCYV 500
           D+ + +QK+  K  + K +PP + +KK+++  + D+R    +Q  YV
Sbjct: 549 DIPKNVQKMIAKHREAKGLPPKEDEKKKKKREKIDIRKKYEVQPDYV 595


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 363 DLEECIQKL-EKLTDIKNIPPAKSKKKQRRNFQPDVRYGEYLQRCYV 500
           D+ + +QK+  K  + K +PP + +KK+++  + D+R    +Q  YV
Sbjct: 549 DIPKNVQKMIAKHREAKGLPPKEDEKKKKKREKIDIRKKYEVQPDYV 595


>Z93381-6|CAB07609.1|  724|Caenorhabditis elegans Hypothetical
           protein C31A11.1 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = +3

Query: 165 KKTIYGPRKEPVWVYLEKEMK----QNIDKK 245
           +KTI   +K  +WV  EKE K    QN+DKK
Sbjct: 693 EKTIIDRKKNELWVVDEKEEKGFTAQNVDKK 723


>Z83218-8|CAB05693.1|  724|Caenorhabditis elegans Hypothetical
           protein C31A11.1 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = +3

Query: 165 KKTIYGPRKEPVWVYLEKEMK----QNIDKK 245
           +KTI   +K  +WV  EKE K    QN+DKK
Sbjct: 693 EKTIIDRKKNELWVVDEKEEKGFTAQNVDKK 723


>U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical
           protein C26B2.6 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 192 EPVWVYLEKEMKQNIDKKPYNEKVGAWLKFLRDLHYYFYRES 317
           +P W  LE     +I   P++E      K L   H YF+ +S
Sbjct: 237 KPTWRILESAADTHIQLMPFDENEKKMFKHLGTAHGYFHLKS 278


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -3

Query: 356 NHTGHQNHCIHIIAFTVKIIMEIS*K-F*PSSYFFIVRLFVNILFHFLLQIY-PNRFFSW 183
           N+ G+ N     +     ++ EIS + F    Y  +  +F+NI FHFL+ I+ P R  S 
Sbjct: 10  NYPGYDNATAISLCQFESLLFEISNRVFYYEHYLSVASIFINI-FHFLILIHKPLRSSSI 68

Query: 182 SINCLFTEKF 153
           +I   F   F
Sbjct: 69  NIIMAFIAIF 78


>AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical
           protein F07G11.3 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 318 YDMNAMILMSSMVFIDLEECIQK-LEKLTDIKNIPPAKSKKKQRRNFQPDVRYGEYLQRC 494
           YD ++  ++S    IDLE+ +QK ++KL D +        K  R  +  D+    Y ++ 
Sbjct: 410 YDNSSTTIISKKDIIDLEDDLQKMMKKLQDTRVF-----SKLPRIRYYSDLVLKCYNEKY 464

Query: 495 YVPFYSN 515
           Y  FY+N
Sbjct: 465 YDLFYNN 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,566,727
Number of Sequences: 27780
Number of extensions: 279703
Number of successful extensions: 809
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)