Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17k08
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 40 4e-04
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 27 1.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.1
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 27 2.1
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 27 2.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.8
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 2.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.0
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 8.7
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 8.7
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 39.5 bits (88), Expect = 4e-04
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 439 SITKDTGAHIEIST-SKDGSLTFLITGKQSAVLEARRQILTHFQQQASKQISIP 597
++ T I +ST SK + TFLI GK SAV ARRQIL ++ +K + P
Sbjct: 179 TVMHQTSTRINVSTASKTKNTTFLIQGKTSAVKAARRQILKLIGRRETKTMPCP 232
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 237 QCVICLR*PISSIAAFPAPCAT*YTTGYKQTSSWLFTAHSSFPCAI*R 380
+C ICL + A F APC+ ++ YK L +H F C I R
Sbjct: 191 ECCICLMPVLPCQALFVAPCS--HSYHYKCIRPTLNESHPYFSCFICR 236
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 235 NNVSFAYDDLFPALPHSQPLVQRNIQQATNKLRVGSSLHTQVFHVPYEERKL 390
NN+ A+ F L H V+ +QQA + S L +P ++R L
Sbjct: 1245 NNIINAFSPFFLELLHPNDHVRNTVQQAIENISNNSKLSVVDLLLPIKDRLL 1296
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 414 GRILKNLPFHN*GYRSAHRNIYQQRWQSNFPYHWKAE-RCSRSAATNFDPF 563
G + N P ++ R RN Y+ + ++W+ E + S ++DPF
Sbjct: 190 GVVYANFPSYHKMCRFFSRNFYKHPLMQQYEWYWRLEPEVTFSCDISYDPF 240
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.6 bits (56), Expect = 2.8
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Frame = +1
Query: 277 PHSQPLVQRNI---QQATNKLRVGSSLHTQVFH-VPYEERKLD---NAN-TFGEGES 423
PHS P + NI Q + K+ V SSL Q++H +P++ ++ NAN T E +S
Sbjct: 248 PHSGPSIPLNIAATQVVSQKMSVPSSLLDQLYHAMPHKLMEISQNTNANITVEESDS 304
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 208 QHAWVHQDERVSHLQPSWIADASFLSPPAVLVR 110
Q+ W D R HL PSW+ + PP ++ +
Sbjct: 947 QYLWFEADRR--HLFPSWVKPSDSEPPPLLVYK 977
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 364 HVPYEERKLDNANTFGEGESLRTC 435
HVPY + KL F G + RTC
Sbjct: 338 HVPYRDSKLTRLLKFSLGGNCRTC 361
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 139 MMHQQSMMVGDVIPVHPDVPMHVEEMNNVGYENNVSFAYDDL 264
++H + G I V P++P H+ + N + NN+ Y +L
Sbjct: 1396 ILHGAGALAGPTIEVDPEIPDHLIKTWNTTW-NNLFIYYPEL 1436
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 8.7
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Frame = +1
Query: 178 PVHPDV------PMHVEEMNNVGYENNVSFAYDDLFPALPHSQPLV--QRNIQQATNKLR 333
PV+ DV P + + N V + +F L P P LV Q+NI + N+ R
Sbjct: 248 PVYKDVRVFDWRPYSIADRNAVLSRMSNAFDNMQLPPDAPERSLLVSKQKNITKLNNEKR 307
Query: 334 VGSSLHTQVFHVP 372
+ L HVP
Sbjct: 308 IPPQLAQPTSHVP 320
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 323 TNFELALHCTLKFSMCHMKNENLTMLILLVRENP*ELAI 439
TN+ + LHC + + H+ +L+ L P L+I
Sbjct: 1212 TNYAIDLHCGISELLIHLSQAQYLILLKLASNLPEMLSI 1250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,072
Number of Sequences: 5004
Number of extensions: 56798
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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