Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17k08
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 29 2.2
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 29 2.9
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802... 28 5.0
07_03_0713 - 20882442-20883068,20883950-20883955 28 5.0
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 28 6.7
03_06_0654 - 35307122-35307205,35307381-35307444,35307486-353075... 28 6.7
08_01_0500 + 4338111-4338195,4339910-4340042,4340116-4340187,434... 27 8.8
07_01_0337 + 2409586-2409888,2409927-2409977 27 8.8
01_04_0078 + 15796336-15797130 27 8.8
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -3
Query: 467 MCAPVSLVMEWQVLKDSPSPKVLALSSFRSSYGT 366
M PVS + + L+D+ SP + LSS RSS GT
Sbjct: 227 MSLPVSSCSDQEDLQDARSPAKVQLSSSRSSSGT 260
>06_01_0520 +
3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 29.1 bits (62), Expect = 2.9
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +1
Query: 139 MMHQQSMMVGDVIPVHPDVPMHV--EEMNNVGYENNVSFAYDDLFPALPHSQPLVQRNIQ 312
+ HQQ M + P+HP + +H+ E NV V + LF + QP +N+Q
Sbjct: 664 LSHQQIMDLNKTWPLHPILLIHLASELPKNVSLMQVVRLLH--LFSSRNRLQPRQNQNLQ 721
Query: 313 QATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGES-LRTCHSIT 447
K SSL Q + + N+++ G +S +TC S T
Sbjct: 722 DELPKESEMSSLVNQT-----DIQSSSNSSSHGSFKSPCQTCSSST 762
>12_02_0451 -
19179592-19179648,19179745-19179879,19180214-19180247,
19180347-19180423,19180523-19180598,19180792-19180925,
19181772-19181878,19182505-19182808,19182913-19183218
Length = 409
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 400 NTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEARRQILTHFQQQAS 579
NT+ + E L+ + D G H+ + T+K TFL ++A L H+ S
Sbjct: 303 NTYTKAEVLKMEGLVLNDMGFHLSVPTTK----TFLRRFLRAAQASRNNHTLEHYTSYKS 358
Query: 580 KQISI 594
I I
Sbjct: 359 SDIQI 363
>07_03_0713 - 20882442-20883068,20883950-20883955
Length = 210
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 265 FPALPHSQPLVQRNIQQATNKLRVGSSLHTQVFH 366
FP++P Q RN+QQ +K S+L T FH
Sbjct: 5 FPSVPAKQRRRPRNLQQVKDK-ATASALETAAFH 37
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 431 VLKDSPSPKVLALSSFRSSYGTWK 360
+ KD P P V SSF + +G W+
Sbjct: 645 IQKDVPYPAVFVTSSFNTRFGVWE 668
>03_06_0654 -
35307122-35307205,35307381-35307444,35307486-35307536,
35307881-35307993,35308083-35308164,35308621-35308741,
35308821-35308980,35309335-35309396,35309548-35309707,
35309794-35310021
Length = 374
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +1
Query: 298 QRNIQQATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGA 462
+R IQ T L VGSS+ +V V EERKL F E ++ HS GA
Sbjct: 132 KRPIQDVTKDL-VGSSISVKVVEVNEEERKL----VFSEKDASWFTHSSLVKIGA 181
>08_01_0500 +
4338111-4338195,4339910-4340042,4340116-4340187,
4340524-4340587,4341383-4341459,4341586-4341657,
4341741-4341853,4341995-4342126,4342204-4342545,
4342628-4343022,4343293-4343603,4343967-4344066
Length = 631
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -2
Query: 552 NLSPRFENSALLSSDKES*TAIFAGRYFDVRSCILSYGMASS*GFSLTKSIS 397
NL R N++L S +S TAI A + D+ + LS + S+ FSL IS
Sbjct: 117 NLDRRLNNNSLSGSIPKSLTAITALQVLDLSNNNLSGEVPSTGSFSLFTPIS 168
>07_01_0337 + 2409586-2409888,2409927-2409977
Length = 117
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 112 GQGLPEETKMMHQQSMMVGDVIPVHPDVP-MHVEEMNNVGYENNVSFAY 255
G G M Q+ + +GD +P+ P V + V +G+EN++ F Y
Sbjct: 64 GDGARRLVNMDAQKQIRMGDSLPIVPSVAFIRVHPQAEIGWENDL-FPY 111
>01_04_0078 + 15796336-15797130
Length = 264
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 265 FPALPHSQPLVQRNIQQATNKLRVGSSLHTQVFHVPYEERK 387
FP L + QP + I Q +L+ GSS H + F PY R+
Sbjct: 161 FP-LQNIQPFISGTISQQ-QRLQSGSSSHVESFGPPYVPRE 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,146,560
Number of Sequences: 37544
Number of extensions: 369723
Number of successful extensions: 976
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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