Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17k08
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    67   1e-11
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    32   0.37 
AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    29   2.6  
Z73972-10|CAA98263.2|  388|Caenorhabditis elegans Hypothetical p...    28   4.5  
AL021474-8|CAA16310.2|  388|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z11505-2|CAA77585.1|  418|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.        27   7.9  
AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess...    27   7.9  
AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess...    27   7.9  

>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
 Frame = +1

Query: 202 HVEEMNNVGYENN-----VSFAYDDLFPALPHSQPLVQRNIQQAT--NKLRVGSSLHTQV 360
           H+EE NNV  +       +SF+Y   FP LP + P      +Q    ++  +  S     
Sbjct: 5   HIEETNNVEIDPATGGAVMSFSYASDFPTLPDAAPASAPTAKQTHVWSRPTLSKSEVNIT 64

Query: 361 FHVPYEERKLDNANTFGE-GESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLE 537
           F +  +ER  +   +FG   E  +   +I   T   IE+S SKDG LT ++ G+++   E
Sbjct: 65  FRLASDERS-NKVKSFGSTSEESKKAQAIATATKTRIELSESKDGELTVVVKGERAKAEE 123

Query: 538 ARRQILTHFQQQASKQISIP 597
           AR +I+   Q QAS++I IP
Sbjct: 124 ARARIIRDLQTQASREIDIP 143


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -2

Query: 420 FSLTKSISIVKFSFFIWHMENLSVQ*RANSKFVCSLLYITLHKGLGMR 277
           F L  + S ++F+ F+W+M  L +     + F+C+L+ + +HK L  R
Sbjct: 175 FILVPATSALQFNSFLWYMLYLKI-----TNFICNLILLFIHKILHQR 217


>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
           protein Y48C3A.14 protein.
          Length = 855

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 495 TAIFAGRYFDVRSCILSYG--MASS*GFSLTKSISIVKF 385
           T  F G+Y D+ S ++SYG     + GF +T+   IV+F
Sbjct: 198 TKFFQGKYGDLDSNVISYGPCQTPTLGFCVTRHDQIVQF 236


>Z73972-10|CAA98263.2|  388|Caenorhabditis elegans Hypothetical
           protein F15H10.4 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 172 VIPVHPDVPMHVEEMNNVGYENNVSFAYDDLFPALPHSQPLVQRN-IQQATNKLRVGSSL 348
           ++  HP     +   N V +EN+++   D+  PAL     +V R  +Q   NK  + ++L
Sbjct: 12  IVDGHPRFKCPLSTCNAVVHENDINAVLDEKEPALERYMSIVHRRYLQYKQNKHSIMAAL 71


>AL021474-8|CAA16310.2|  388|Caenorhabditis elegans Hypothetical
           protein F15H10.4 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 172 VIPVHPDVPMHVEEMNNVGYENNVSFAYDDLFPALPHSQPLVQRN-IQQATNKLRVGSSL 348
           ++  HP     +   N V +EN+++   D+  PAL     +V R  +Q   NK  + ++L
Sbjct: 12  IVDGHPRFKCPLSTCNAVVHENDINAVLDEKEPALERYMSIVHRRYLQYKQNKHSIMAAL 71


>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 545 RRASRTALCFPVIRKVRLPSLLVDISMCAPVSLVMEWQVLKDSPS 411
           R  +  A C P  R +  P  LV I  C P+S  + + VLK + S
Sbjct: 102 RHKNVPAHCSPAFRDIH-PGDLVTIGECRPLSKTVRFNVLKVNKS 145


>Z11505-2|CAA77585.1|  418|Caenorhabditis elegans Hypothetical
           protein F59B2.3 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 346 LHTQVFHVPYEERKLDNAN-TFGEGESLRTC-HSITKDTGAHIEIS 477
           L TQ  HV   E KLD  N T G   S+  C   + K TG  IE +
Sbjct: 320 LGTQTIHVKGLEAKLDGTNTTAGSVASMPYCIRHLMKATGCPIEFA 365


>U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 430 TCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEARRQILTHFQQQ 573
           T   I +DT  +I I+ S++    F +TG    V  AR++I TH  Q+
Sbjct: 158 TIKRIQQDTHTYI-ITPSREREPVFEVTGLPHNVEAARKEIETHIFQR 204


>AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical
           protein T04C4.1b protein.
          Length = 893

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 316 PVVYYVAQGAGNAAMLEIGHRRQMTHCSHIQHYSFLQHAWVH 191
           PV   VA+  G  A+  +GHRRQ +   H+Q +    HA  H
Sbjct: 26  PVAPVVARVEGLRAV-PVGHRRQHSSPGHLQQFQQELHARHH 66


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 316 PVVYYVAQGAGNAAMLEIGHRRQMTHCSHIQHYSFLQHAWVH 191
           PV   VA+  G  A+  +GHRRQ +   H+Q +    HA  H
Sbjct: 87  PVAPVVARVEGLRAV-PVGHRRQHSSPGHLQQFQQELHARHH 127


>AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess
           protein 3, isoform a protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 430 TCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEARRQILTHFQQQ 573
           T   I +DT  +I I+ S++    F +TG    V  AR++I TH  Q+
Sbjct: 158 TIKRIQQDTHTYI-ITPSREREPVFEVTGLPHNVEAARKEIETHIFQR 204


>AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess
           protein 3, isoform b protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 430 TCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLEARRQILTHFQQQ 573
           T   I +DT  +I I+ S++    F +TG    V  AR++I TH  Q+
Sbjct: 186 TIKRIQQDTHTYI-ITPSREREPVFEVTGLPHNVEAARKEIETHIFQR 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,661,322
Number of Sequences: 27780
Number of extensions: 325225
Number of successful extensions: 933
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)