Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17k06
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    29   0.40 
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   3.8  
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    25   6.6  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   6.6  
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    25   6.6  
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.7  

>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
 Frame = +1

Query: 139 GKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKSAGIKT 318
           GK + +++  + P   L +  DRI+A D +  + +  K  +  + +   F++LK   ++T
Sbjct: 18  GKVRDLYECVEFPDDLLFVATDRISAYDFIMENGIPEKGKVLTKISEFWFDVLK-PHVQT 76

Query: 319 AFV--------------KIASETAFLSKKCEMIPIEWVTRRLATGSFLK 423
             +              +   + + L KK +++PIE + R   TGS  K
Sbjct: 77  HLITSRWEELPPVITKHEELKDRSMLVKKYKILPIEAIVRGYITGSAWK 125


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 192 KQAVPRLVRNIEYLFGLTLNEKFAQFILSN 103
           +   P+L+ N+  L  L++NEK+  F++ N
Sbjct: 49  RNGAPKLLLNLFSLENLSMNEKYQVFVVLN 78


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 268 QTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPE 444
           QTN ++ + +     K    KIA  T  L K+ +  P+  ++ +L      +++  VPE
Sbjct: 29  QTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPE 87


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 417 ERASCKAAGNPFNGDHLTF 361
           +R + K  GN F GDH  F
Sbjct: 21  KRRASKVVGNSFGGDHFNF 39


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 457 TPPKQETFFKDDANHDPQWSEEQIISAKFNY-NGLLIGRDEVDYMRKATIL 606
           TP        D+   D   +E+Q +  KFNY   L   RDE  +  K  +L
Sbjct: 302 TPDTSPLLDSDEVVSDDDSNEQQTMMMKFNYLQHLRNKRDEAVHAEKRRLL 352


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 268 QTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGSFLKRNPGVPE 444
           QTN ++ + +     K    KIA  T  L K+ +  P+  ++ +L      +++  VPE
Sbjct: 29  QTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPE 87


>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 232 AHDLEGKAAISNQTNAKVFEILKSAGIKTAFVKIASETAFLSKK 363
           A+DL+   AI N+T   V E +       A     SE+  +SKK
Sbjct: 18  AYDLDSSTAIENETKLSVKEKVAKEIANIALRSGGSESNGISKK 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,833
Number of Sequences: 5004
Number of extensions: 57715
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)