Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17k04
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...    43   5e-05
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    27   1.8  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   2.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.4  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   7.4  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.4  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    25   9.8  

>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +3

Query: 6   EKQSKCLEALEKL-KAGQ-KFPDVAAAYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALP 176
           E+  K  E  E+L K+G     D+A   S+   AR+GG+LG   R  M  PF+DAAFAL 
Sbjct: 95  EEARKLAEHYEQLLKSGSVSMHDLAMKESDCSSARRGGELGEFGRDEMQKPFEDAAFAL- 153

Query: 177 ISSVTNPVYTNPPVKTKFGYHII 245
                 P   +  V+T  G+HII
Sbjct: 154 -----KPGEISGVVETSSGFHII 171


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +2

Query: 347 QFDKDLALLPDAQTSTQSFDDDMEDFSSRDYGLKMSFLRLY 469
           +FD++     +      +FDDD+ + +  +  LK++ L +Y
Sbjct: 172 EFDQEYMNEAELPIKDMNFDDDLHESAKHEMQLKLTMLNIY 212


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 269 LSFLPFDHNYMITKFRFNWRVCVNWISY 186
           ++F    HNY     RF W VC  W  Y
Sbjct: 194 IAFGGLHHNYRGRSARFEWVVCFLWSIY 221


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 419  DFSSRDYGL-KMSFLRLYQMMHITIFLALIYFCNICIWYIMSRNSL 553
            DF+ + +G+ + +F  LY ++H+   L + Y C I   Y+  RNS+
Sbjct: 1261 DFAVQKHGIWRRTFTGLY-IVHLLFLLTIFYPCPIAYTYV--RNSI 1303


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -2

Query: 538 HYVPDANVTEIYQCQKYGNMHHLI*TKETHLQTIIS 431
           HY+ D + +  Y   ++ ++H  I    TH   ++S
Sbjct: 320 HYINDNDPSNSYSSYQHSHVHDFIHKNNTHSNRVLS 355


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -1

Query: 452 SSSNHNLC*RNLPCHHQRTVLKFGHQGAELNLYQTALGGYISFP**TTKVLPKNIQIRKT 273
           S+++H+     LPC +  T   F  +    N+      GYI+    + KV  +N  I+K 
Sbjct: 233 SNASHSSSTSELPCTYGNTSSIFQVKNEMSNIKSAISEGYIAHDQQSKKVSVQN--IKKE 290

Query: 272 FLSFLPFD 249
           FL  +PF+
Sbjct: 291 FL--IPFE 296


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +2

Query: 461 RLYQMMHITIFLAL-IYFCNICIWYIMSRNSLPKNLGYK----FKVTIPS*CLN 607
           R +   H++  L     +C   IW +  R  + KN G+K     ++ +P+ C N
Sbjct: 396 RFHDFKHVSFKLPTSCSYCREIIWGLSKRGCVCKNCGFKCHARCELLVPANCKN 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,926
Number of Sequences: 5004
Number of extensions: 61248
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)