Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17k04
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0095 - 14556508-14556550,14556824-14556966,14557703-145577...    66   2e-11
07_03_1741 + 29156076-29156316,29156554-29156676,29156784-291568...    54   1e-07
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916     45   6e-05
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610...    30   1.9  
11_01_0708 + 5817545-5818957                                           28   7.7  

>09_04_0095 -
           14556508-14556550,14556824-14556966,14557703-14557744,
           14557940-14558049,14558369-14558519
          Length = 162

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
 Frame = +3

Query: 69  VAAAYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALPISSVTNPVYTNPPVKTKFGYHII 245
           +A  YSE    ++GGDLGW  RG M GPFQD AF+ P+ +      T+ P K+  GYH I
Sbjct: 102 IAQEYSECPSGKKGGDLGWFPRGKMAGPFQDVAFSTPVGA------TSAPFKSTHGYHFI 155

Query: 246 MVEGKK 263
           + EG+K
Sbjct: 156 LCEGRK 161


>07_03_1741 +
           29156076-29156316,29156554-29156676,29156784-29156875,
           29157577-29157677,29157752-29157862,29158254-29158362,
           29158589-29158639,29158758-29158838
          Length = 302

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
 Frame = +3

Query: 6   EKQSKCLEALEK--LKAGQKFPDVAAAYSEDKARQ-GGDLGWMTRGSMVGPFQDAAFALP 176
           E+  + L  LEK  +  G    D+A  YS   +++ GG LGW+ RG MV  F++AAF  P
Sbjct: 105 EQDVRLLVDLEKNIITGGADLSDLAVEYSLCPSKENGGMLGWVRRGQMVPEFEEAAFGAP 164

Query: 177 ISSVTNPVYTNPPVKTKFGYHIIMV 251
           ++ V          KTKFG+H++ V
Sbjct: 165 LNKVVR-------CKTKFGWHLLQV 182


>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
          Length = 234

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +3

Query: 36  EKLKAGQ-KFPDVAAAYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALPISSVTNPVYTN 209
           EK+ AG+ KF DVA   S+ + A++GGDLG   RG M   F+ A  AL +  +++ V T+
Sbjct: 165 EKIVAGERKFEDVATEESDCNSAKRGGDLGPFERGKMQKAFEKAVLALKVGEISDVVDTD 224

Query: 210 PPV 218
             V
Sbjct: 225 SGV 227


>02_05_0490 +
           29456825-29457499,29458771-29459057,29460922-29461039,
           29461451-29461972,29462058-29462170,29463033-29463053,
           29463726-29463960,29464218-29464381,29464695-29464776,
           29465077-29465166,29465625-29465858,29466347-29466418,
           29466857-29467000,29467573-29467659,29467940-29468098,
           29469216-29469476,29469789-29469836
          Length = 1103

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 15  SKCLEALEKLKAGQKFPDVAAAYSEDKARQGGDLG 119
           SKCL AL  +KAG      AAA +  K +Q G  G
Sbjct: 217 SKCLRALTTIKAGSGGAAAAAAAAAKKKQQQGGAG 251


>11_01_0708 + 5817545-5818957
          Length = 470

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 539 SLCTRCKCYRNISMPEIW*YASFDINEGNSSSNHNLC 429
           +L + C  + N+ + EI  +  F++ EG++S+   LC
Sbjct: 381 ALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTLC 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,368,575
Number of Sequences: 37544
Number of extensions: 356128
Number of successful extensions: 729
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)