Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17j23
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282...    29   2.4  
04_03_0703 - 18870287-18871351,18871542-18871733                       28   5.6  
09_04_0232 - 15882589-15882720,15882799-15882889,15882987-158830...    27   9.9  

>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
            20928549-20928788,20928884-20928978,20929087-20929434,
            20929824-20930042,20930422-20930487,20931191-20931362,
            20931456-20931703,20931933-20932073,20932238-20932330,
            20932421-20932471,20933571-20933693,20933793-20934035,
            20934131-20934211,20935245-20935340,20935535-20936320,
            20936443-20937012,20937322-20937427,20938102-20938206,
            20938311-20938432,20939321-20939413,20940081-20940104
          Length = 1685

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 359  LRSTSLARAIVSSVPG*SPHEVTLL*YINCYSTISGY 249
            +R TSL+R   S+    SPH++     ++CY+T + Y
Sbjct: 1281 VRVTSLSRGYTSNRGLRSPHQIQACAAVSCYATCTSY 1317


>04_03_0703 - 18870287-18871351,18871542-18871733
          Length = 418

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 543 TLYALSHILLCIYTERSVPHSKDLQVPVLLLYCEPT 436
           TL  + +  LC + ERS P  KD+ V      CEPT
Sbjct: 362 TLVTMLYKELCWHRERSKPVVKDVNVRGSRYSCEPT 397


>09_04_0232 -
           15882589-15882720,15882799-15882889,15882987-15883087,
           15883494-15883592,15883693-15883830,15883918-15884508,
           15884819-15884989,15885068-15885203,15885561-15885592,
           15886280-15886336,15886434-15886686,15886762-15886850,
           15887181-15887234,15887498-15887689,15887777-15887938
          Length = 765

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 336 PSKRSASQNLPPTMRPTKNMRRETQCLSV*YLAVWVHNTEAIQ 464
           PS  S ++  P TMRP  + R++     + +L   VH T  ++
Sbjct: 480 PSSSSKAKLKPATMRPIPHSRKQQMHPFMGFLEATVHETSQVK 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,897,727
Number of Sequences: 37544
Number of extensions: 266325
Number of successful extensions: 493
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)