Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17j22
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    28   1.1  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    27   2.5  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    27   3.3  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   5.7  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.5  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   7.5  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   9.9  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   9.9  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   9.9  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 505 LGYRPRLNLLRTGRLSIVKLKRIRQCCILMGPL-RRTTLTFLHSELKLP 648
           L Y P     +   + I++ KR+R+ C L G L  R +   +  ELKLP
Sbjct: 473 LRYSPMYLYKKQAWMQIIEKKRVREFCDLFGSLVCRHSKQDVEEELKLP 521


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 417 PKRHDARSHYFKEIRKDNLQL-YKRIVKAKARVQTTAELIEDWKTKHREIEKDTT 578
           P   D RS Y    ++    +  KR+V+ +    ++++L ED+K   RE+++  T
Sbjct: 210 PNLFDFRSGYIFPFQRVGATVPKKRLVETETPPPSSSKLKEDYKDSKREMKRSNT 264


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 357 KRQHFLRGKVDCNWLKLPVRPKRHDARS 440
           K +  L G+VDC W K P   K  D  S
Sbjct: 191 KSKLILAGEVDCIWDKKPCSAKESDVHS 218


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 151 YFLFKDSLEL--TFFNIAFNKVILYIICLNYCTLNFLL 44
           Y+ F   LE   TF +  F   + +I+CL YC+  F +
Sbjct: 412 YWKFTALLEASATFISYPFQS-LAFIVCLKYCSFYFFI 448


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 552 HREIEKDTTMLYPYGPLAEDHAYISTQRTEA 644
           HR++E + + L PY P  + + Y+     +A
Sbjct: 437 HRKLESELSHLPPYSPYRDSYFYLEDDDGDA 467


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 333 NINLLFNIKRQHFL 374
           N+N+ FNI  QHFL
Sbjct: 282 NVNITFNIGEQHFL 295


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 96  LLNAILKKVSSSESLNRKYPS 158
           L NA++  +SSS +L++ YPS
Sbjct: 184 LFNALISILSSSSTLHKLYPS 204


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 454 KYVKIICSFTNVSSKRKLGY 513
           +YVK+  S TN S +RK+ Y
Sbjct: 244 RYVKLYGSTTNTSKRRKVDY 263


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +3

Query: 204 RKHTHKYSSITAVVDTSPPRFSSAPMYRNFEQWTQQNRQIYATNINL---LFNIKRQHFL 374
           ++H +  +S+   +          P   N +++TQQ R++Y  N++     F +K     
Sbjct: 29  KRHVNGSNSLKRGLHFDGEHTERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQ 88

Query: 375 RGKV-DCNWLKLP 410
            G V +C  L LP
Sbjct: 89  VGNVLNCEILNLP 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,081
Number of Sequences: 5004
Number of extensions: 49274
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)