Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17j14
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 36 0.006
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 35 0.011
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 2.8
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 3.7
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc... 26 4.9
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 26 4.9
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 6.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 8.6
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 25 8.6
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 398 DVERAEWLNRILLQVWPNVNSYAKTLLKDLIEPAVAESLANYKLSGFKFERMILGTIAPR 577
D E WLN L Q W + ++ + ++E++ ++ + LGT +PR
Sbjct: 217 DSETVTWLNTFLQQFWYIFEPSLSERITEITDQILSENVPSF-IDSMALSEFTLGTKSPR 275
Query: 578 VGGVKVYDK 604
+G ++ Y K
Sbjct: 276 MGFIRSYPK 284
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 34.7 bits (76), Expect = 0.011
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 404 ERAEWLNRILLQVWPNVNSYAKTLLKDLIEPAVAESLANY 523
E AEW+N +L +VWP +N + + D IE + S+ ++
Sbjct: 230 ESAEWMNHLLEKVWPLINPEMFSSVADQIEDVMQASIPSF 269
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 414 SARSTSGKNTHE-GKSSSLASITSFSEDSAATFAMLRLYSFS 292
S S SG + H G SS +S TS SA+TF + R Y F+
Sbjct: 462 SYTSASGSSAHSSGSSSGSSSATS----SASTFNLSRFYVFA 499
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 284 WRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPDVERAEWLNRI 430
++ EY++ + + L S+ D+I ++DL S + D E +E L ++
Sbjct: 257 FKSTEEYEQQMITIRHLESQSDIINTTINDLKSQMTITD-ESSEDLEKL 304
>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 284 WRKEN--EYKRNIAKVAALSSEKDVILARLDDLP 379
+RKE+ Y++ IAKVA L ++ARL+ P
Sbjct: 177 FRKEDIDRYEQTIAKVAYLKKNLPRVVARLEKTP 210
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 369 SSLASITSFSEDSAATFAMLRLYSFSLRH 283
S A+I S DSA F RLY L+H
Sbjct: 723 SKTAAILGVSRDSAKVFNYGRLYGAGLKH 751
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 374 SRQVSLVSHLFQKTVQRPLRCCVCIRS 294
+R +L SH+ T RP +C +C +S
Sbjct: 582 TRAYNLKSHMNTHTNYRPFQCSICKKS 608
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 24 TVLCITNYEKILSTECND*NWP 89
T++C N+EK+L C++ N P
Sbjct: 2573 TIMCPKNHEKVLVLFCDEINLP 2594
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 404 ERAEWLNRILLQVWPNVNS 460
ER EW+ LLQ+ N+NS
Sbjct: 390 ERDEWIRNQLLQINRNINS 408
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 494 PAVAESLANYKLSGFKFERMILGTIAPRVGGVKVY 598
P V E YK F E +G I PR GG+ Y
Sbjct: 347 PKVVELKNRYKFYLFIDEAHSIGAIGPRGGGICDY 381
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,140
Number of Sequences: 5004
Number of extensions: 52618
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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