Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17j11
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055...    52   4e-07
04_04_0339 - 24513699-24516827                                         31   1.1  
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522...    30   1.5  
06_01_0160 - 1205454-1205482,1205647-1205732,1205903-1205956,120...    29   2.6  
08_02_0610 + 19307537-19308011,19308187-19310846                       28   6.0  
04_03_0357 + 14852584-14853058,14853116-14855754                       28   6.0  
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    28   7.9  

>01_05_0521 -
           22904656-22904962,22905132-22905340,22905432-22905521,
           22905624-22905734,22906401-22906468,22906611-22906653
          Length = 275

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 39/117 (33%), Positives = 58/117 (49%)
 Frame = +1

Query: 331 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 510
           MAP  Y D+GKK  D+  + Y     K  L T +  GV  T+  T   ES  VFG L ++
Sbjct: 1   MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57

Query: 511 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSF 681
             +K+  LT   K N+++ L T +T+ +    GLK  L      Q   ++GKL+  +
Sbjct: 58  --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQY 109


>04_04_0339 - 24513699-24516827
          Length = 1042

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +1

Query: 115 INQLRKLYDRLPFVDAAVTQETISCLRPDGTIGQMIICKDEDGEIQCPNNETIQSQENKF 294
           +NQLR L     ++ A   + TIS LRP  ++ ++ IC  E+       N  +Q +    
Sbjct: 699 MNQLRNLEILPRYIAAENHEHTISELRPLVSLKELSICNMENASFDDARNVILQKKNRLV 758

Query: 295 SL 300
           SL
Sbjct: 759 SL 760


>12_02_1123 -
           26250300-26250362,26251988-26252042,26252128-26252224,
           26252364-26253048,26253354-26253721,26253931-26254074,
           26254925-26255276
          Length = 587

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +1

Query: 340 PYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKF 513
           P Y   G +  D+ SK +H     LDL   S  + G++F SG+ S   +  V   L+ + 
Sbjct: 261 PQYVH-GTQLPDLESKFFH-----LDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFRE 314

Query: 514 AVKDYGLTFTEKWNTDNT 567
           A+KDY    T+  N D T
Sbjct: 315 AIKDYSTPSTKTLNRDLT 332


>06_01_0160 -
           1205454-1205482,1205647-1205732,1205903-1205956,
           1206035-1206130,1207332-1207448,1207834-1207952
          Length = 166

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 308 GCETFTMTWLPHIMLTLERRPMMSSAR 388
           GC TFT  W+ H+  ++ RRP   SAR
Sbjct: 6   GC-TFTTGWMQHLAASVLRRPPRGSAR 31


>08_02_0610 + 19307537-19308011,19308187-19310846
          Length = 1044

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -2

Query: 351 SIIWGSHVIVKVSQPSP*REFIFLALYCLIIWTLNF----TIFIFANYHLSY-CS 202
           S +WGS   + ++ P P  +  +L    L +W L +    TI +F +  + + CS
Sbjct: 40  SDLWGSSNAIAIATPPPSEDLRYLKSSALDVWLLGYEFPETIIVFMHKQIHFLCS 94


>04_03_0357 + 14852584-14853058,14853116-14855754
          Length = 1037

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -2

Query: 351 SIIWGSHVIVKVSQPSP*REFIFLALYCLIIWTLNF----TIFIFANYHLSY-CS 202
           S +WGS   + ++ P P  +  +L    L +W L +    TI +F +  + + CS
Sbjct: 40  SDLWGSSNAIAIATPPPSEDLRYLKSSALDVWLLGYEFPETIIVFMHKQIHFLCS 94


>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 680 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 552
           ++V +  VL +  C   + SR+ L PA+ LSW   S    LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,212,577
Number of Sequences: 37544
Number of extensions: 356646
Number of successful extensions: 1036
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)