Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17j09
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.32 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 468 LIVWNNMIALVCIEEFLFSAFLNCCN 391
           L+ W N  +L    EF FS  LNC N
Sbjct: 12  LLFWQNSASLENDNEFGFSYLLNCKN 37


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 19  VINEKILKM*KSKPFNKQTKVLHSI 93
           ++N+K  ++ +SKP + + KVL  I
Sbjct: 258 MVNQKFSELIQSKPQHARRKVLAGI 282


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 376 EVNSLVAAVEEGAKEEFFDAHESYHVIPD 462
           +++  V  ++ G+     ++HES  V+PD
Sbjct: 540 QMDEFVVNLKSGSNTIERNSHESVFVVPD 568


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 53  QNHSINKQKFYTAFH 97
           Q+H++ K   Y AFH
Sbjct: 274 QDHTLEKSNDYYAFH 288


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 376 EVNSLVAAVEEGAKEEFFDAHESYHVIPD 462
           +++  V  ++ G+     ++HES  V+PD
Sbjct: 540 QMDEFVVNLKSGSNTIERNSHESVFVVPD 568


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 258 VFLNFMNIHHKRCSVV 211
           ++LN M  H  RC+ V
Sbjct: 689 IYLNTMESHEVRCTAV 704


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,906
Number of Sequences: 438
Number of extensions: 1947
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)