Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17j07
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   2.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/13 (61%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
 Frame = -1

Query: 658 LMGYWALGPQ-CD 623
           L+GYW  GP+ CD
Sbjct: 87  LLGYWVFGPRFCD 99


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 145 NSDNNPQNLANSYSTNHGSCQ 207
           N +NN  N  N+Y+TN+   Q
Sbjct: 93  NYNNNYNNYNNNYNTNYKKLQ 113


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 271 SMD*CSHARENHSYCDCDNRLVDNFHDL*NNCLLSSEDYYQ 149
           SMD  + A   +S+   D+    N +   ++CLL   D YQ
Sbjct: 80  SMDSQNSASTYNSFLSSDSASSGNVYCKCDDCLLGIVDDYQ 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,429
Number of Sequences: 438
Number of extensions: 3302
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)