Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17j03
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.50
03_06_0290 + 32878040-32880193,32881607-32881720 31 1.1
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 1.5
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 29 3.5
07_03_1191 + 24690936-24691029,24691184-24691377 29 3.5
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 29 3.5
01_02_0048 - 10626467-10627498,10628522-10628617 29 4.6
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 6.1
09_06_0177 + 21365314-21366100,21367451-21367578,21367715-213678... 28 8.1
08_02_1172 + 24898290-24899141,24900864-24901328 28 8.1
02_01_0775 + 5775949-5777385 28 8.1
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 78 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 206
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>03_06_0290 + 32878040-32880193,32881607-32881720
Length = 755
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 421 YACKQGCNLLSLSIHLFIKSLCNHG 347
Y CK+GCNL S S+ + I+ C G
Sbjct: 504 YHCKRGCNLTSESLEMLIQESCMVG 528
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 78 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 179
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 255 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 85
S +N+++ RCG HC L + L + H + E G GC DQSG
Sbjct: 20 SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 78 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 188
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 80 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 253
+PP PL+P +PSS+ H LQ + L +HS +RP S L L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238
Query: 254 LPNS 265
+PN+
Sbjct: 239 MPNA 242
>01_02_0048 - 10626467-10627498,10628522-10628617
Length = 375
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 536 SWDLHYLRLWDCFVL*LHS*CYL-PFRCFYCLCTVYIL 646
+W LH+ R D L S C L +R FYC C +L
Sbjct: 59 TWPLHHFRRLDGVHCRLCSSCLLLEYRSFYCCCCFLLL 96
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 232 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 86
P+W G ++ AV G + P+ +G+ ++ P Q+ + W+ VW
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56
>09_06_0177 +
21365314-21366100,21367451-21367578,21367715-21367870,
21368006-21368196,21369392-21369434,21369537-21369627,
21369859-21369935,21370278-21370366,21370474-21370657,
21370885-21371138,21371465-21371567,21371646-21371977,
21372060-21372504
Length = 959
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 270 CWCSDSGSSWFRY-LKRFMP 326
CW DS SW RY +KR +P
Sbjct: 100 CWIDDSAVSWLRYAVKRKVP 119
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 80 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHR-SLRTLTLL 256
LPP + L P H QYPP ++ +H Q PS P R +L L+L
Sbjct: 40 LPPPYAALYPTAGGVGVGVGAHHHHQYPPAAFFHPPPVHQQHQAPPSPPLREALPLLSLS 99
Query: 257 P 259
P
Sbjct: 100 P 100
>02_01_0775 + 5775949-5777385
Length = 478
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -1
Query: 165 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGA 49
GG +W Q RV G GC G + CGA
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGA 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,433,670
Number of Sequences: 37544
Number of extensions: 437539
Number of successful extensions: 1233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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