Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17j03
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    76   3e-14
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    76   3e-14
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    76   3e-14
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    29   4.2  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U40410-1|AAA81391.1|  480|Caenorhabditis elegans Hypothetical pr...    27   9.6  
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ...    27   9.6  
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ...    27   9.6  
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou...    27   9.6  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 35/40 (87%), Positives = 37/40 (92%)
 Frame = +1

Query: 448 GIGIGVVFGCLIIGYARNPSLKQQIFSYAILGFALSEAMG 567
           G GIG VFG L+IGYARNPSLKQQ+FSYAILGFALSEAMG
Sbjct: 39  GAGIGNVFGALVIGYARNPSLKQQLFSYAILGFALSEAMG 78



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 205 AVRSFQTTSVTKDIDSAAKFI 267
           A R   TT   KDIDSAAK+I
Sbjct: 6   AARMISTTVARKDIDSAAKYI 26


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 35/40 (87%), Positives = 37/40 (92%)
 Frame = +1

Query: 448 GIGIGVVFGCLIIGYARNPSLKQQIFSYAILGFALSEAMG 567
           G GIG VFG L+IGYARNPSLKQQ+FSYAILGFALSEAMG
Sbjct: 39  GAGIGNVFGALVIGYARNPSLKQQLFSYAILGFALSEAMG 78



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 205 AVRSFQTTSVTKDIDSAAKFI 267
           A R   TT   KDIDSAAK+I
Sbjct: 6   AARMISTTVARKDIDSAAKYI 26


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 35/40 (87%), Positives = 37/40 (92%)
 Frame = +1

Query: 448 GIGIGVVFGCLIIGYARNPSLKQQIFSYAILGFALSEAMG 567
           G GIG VFG L+IGYARNPSLKQQ+FSYAILGFALSEAMG
Sbjct: 63  GAGIGNVFGALVIGYARNPSLKQQLFSYAILGFALSEAMG 102



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 205 AVRSFQTTSVTKDIDSAAKFI 267
           A R   TT   KDIDSAAK+I
Sbjct: 30  AARMISTTVARKDIDSAAKYI 50


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = -1

Query: 291 SHCRCTSTN-EFGSRVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGYCCKWSHQC 133
           SHC  T    +   RV   ++ C    P CR   +LC  SRY   M  YC K    C
Sbjct: 307 SHCSLTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENYCPKACGHC 363


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 132 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 221
           C+    C +     D  CCPY + C A  P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +3

Query: 72  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 197
           N  C     P       +  C+  T C+S +   +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +1

Query: 385 IETTDCSPACMHISVQSCTLRGIGIGVVFGCLIIGYARNPSLKQQI 522
           ++   C PAC  I  QSC   G    V+    ++  A  P    Q+
Sbjct: 736 VQAATCQPACQSICQQSCAPLGTSAPVMQTIPVVPVATAPVASTQL 781


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 123 LQLCTGATTCSSTHPYTDGTCCPYTA 200
           +Q C+G   C  TH   +  CCP  A
Sbjct: 373 VQRCSGKEHCPETHDCKNTVCCPKPA 398


>U40410-1|AAA81391.1|  480|Caenorhabditis elegans Hypothetical
           protein C54G7.2 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 400 CSPACMHISVQSCTLRGIGIGVVFGCLIIGYARNPSLKQQIFSYAILGFA 549
           CS   ++  V++     +GIG+VF C   G A    L   + SYAI+ FA
Sbjct: 48  CSLKQVNRQVRTVVPAVVGIGIVFFC--FGRAIKHLLANALGSYAIMYFA 95


>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform b
           protein.
          Length = 1047

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 438 YPKRYWYWSGFWMLNHWLCTQSLTQATNILICY 536
           Y +++W W  F M+  +LCT S+  +   +  Y
Sbjct: 483 YMRQWWNWLDFLMICLYLCTISIRLSAYYIFTY 515


>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform a
           protein.
          Length = 1027

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 438 YPKRYWYWSGFWMLNHWLCTQSLTQATNILICY 536
           Y +++W W  F M+  +LCT S+  +   +  Y
Sbjct: 463 YMRQWWNWLDFLMICLYLCTISIRLSAYYIFTY 495


>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
           cation channel proteinprotein.
          Length = 1027

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 438 YPKRYWYWSGFWMLNHWLCTQSLTQATNILICY 536
           Y +++W W  F M+  +LCT S+  +   +  Y
Sbjct: 463 YMRQWWNWLDFLMICLYLCTISIRLSAYYIFTY 495


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,524,464
Number of Sequences: 27780
Number of extensions: 378623
Number of successful extensions: 1269
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)