Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17j03
(693 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 25 0.52
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 25 0.52
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.4
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 21 8.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 8.4
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 25.4 bits (53), Expect = 0.52
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 462 SNTNTS*GTRLNTYMHASRAAICCLYLYIYSSNRYVIMGVVYSF 331
SN NTS + + ++AAI +LY+ S Y +M ++ +F
Sbjct: 259 SNANTS---SQSAEIRIAKAAITICFLYVLSWTPYGVMSMIGAF 299
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 25.4 bits (53), Expect = 0.52
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 88 WRQTAFCFYKVRRATTKNTEKEETGL 11
W Q FC+++ AT KN + L
Sbjct: 533 WFQNTFCYFRRNAATWKNAVRHNLSL 558
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 35 VLCCRAPHLI 64
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 35 VLCCRAPHLI 64
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 35 VLCCRAPHLI 64
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 35 VLCCRAPHLI 64
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 35 VLCCRAPHLI 64
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 35 VLCCRAPHLI 64
V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 35 VLCCRAPHLI 64
V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2
Query: 35 VLCCRAPHLI 64
V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 21.4 bits (43), Expect = 8.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +2
Query: 182 LLSLHSSLQCGPSRPHRSLRTLTLLPNS 265
+L ++ L C + +S+R +T LP++
Sbjct: 208 MLGIYCRLYCYAQKHVKSIRAVTKLPDT 235
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/11 (63%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
Frame = +2
Query: 152 QQYP-PIHRWY 181
Q +P P+HRWY
Sbjct: 237 QGFPVPVHRWY 247
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,602
Number of Sequences: 438
Number of extensions: 4389
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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