Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17j01
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.4  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = -1

Query: 300 GCYE*TPFQISGFEVFFQNKSQMNSLFFQSVQFGLIDIRHCL*YRGYITIGTRF 139
           G Y+     I G+   FQNK+ +     QS    + D    + Y+  ++   R+
Sbjct: 381 GMYDILARDILGYNFDFQNKNNLIPSALQSYSTSMRDPAFYMLYQNILSYFLRY 434


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 572 IVFAIAKICSCTSVGTVFNVGSLSRTRT 489
           ++ A + + SC   G +F + S  RTRT
Sbjct: 6   VLQAESDVSSCVIFGVLFVLFSFLRTRT 33


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 572 IVFAIAKICSCTSVGTVFNVGSLSRTRT 489
           ++ A + + SC   G +F + S  RTRT
Sbjct: 6   VLQAESDVSSCVIFGVLFVLFSFLRTRT 33


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 531 NGCARTNLSDGKYYDD 578
           NG   T+LSDG Y+ +
Sbjct: 507 NGEVATSLSDGSYFGE 522


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 531 NGCARTNLSDGKYYDD 578
           NG   T+LSDG Y+ +
Sbjct: 475 NGEVATSLSDGSYFGE 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,132
Number of Sequences: 438
Number of extensions: 4277
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)