Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17i22
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    30   0.086
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   1.4  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   1.4  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   2.4  
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    25   3.2  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    23   7.5  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    23   7.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    23   9.9  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    23   9.9  

>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 29.9 bits (64), Expect = 0.086
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 109 KSTKSLTNIKTLMKESNETFFGSAHFESDRLFSFTKLDEV 228
           ++ + +T+++T + E NET FG    E +R F F KL E+
Sbjct: 176 QAQQQITSLETQLYEVNETMFG---LERERDFYFNKLREI 212


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 124 LTNIKTLMKESNETFFGSAHFESDRLFSFTKLDEVCSLSPSL 249
           LT +   +KES  +F  +    S RLF F++L   C +  SL
Sbjct: 306 LTLLYNSVKESYHSFKHAMSISSIRLFLFSRLFINCGIQTSL 347


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 19  METSLENFPNFKSHLFDNYKLCSETSLTRLKSTKSLTNIKTLMKESNE 162
           +ET+L N      HL  + K   + SL + +  +S +N+  + +E+N+
Sbjct: 148 LETNLPNVRELVMHLLQSLKY--KQSLVKSRLNQSRSNLPQMTREAND 193


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 1   YDERKEMETSLENFPN 48
           +D+ K+  TSLENF N
Sbjct: 671 FDQAKQFNTSLENFKN 686


>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +1

Query: 16  EMETSLENFPNFK---SHLFDNYKLCSETSLTRLKSTKSLTNIKTLMKESNETFFGSA 180
           ++ T L NF   K     L  NY    ET+    K+  ++ NIK  +  +  +F   A
Sbjct: 144 DINTHLLNFVEKKLKQERLAQNYSENGETNALNTKNESTVQNIKNSLHPNEHSFIRDA 201


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 94  SLTRLKSTKSLTNIKTLMKESNETFFGSAHFESDRLFSFT-KLDEVCSLSPSLM 252
           +L  L S +S+ N+ + +  S  TF       +DR  SFT KL     +  SL+
Sbjct: 356 NLYPLSSRRSVPNLISSLGTSPSTFSSQFLKSTDRTHSFTSKLQSFNPVGTSLL 409


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 175 SAHFESDRLFSFTKLDEVCSLS 240
           SA+FES R      + ++CSL+
Sbjct: 688 SAYFESSRQLDIKNIYKICSLT 709


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 242 GLREQTSSNLVKLNNRSDSKCAEPKNVSF 156
           G  +Q+   +   NN+ DS   +  NVSF
Sbjct: 132 GSIDQSVLKVAATNNKDDSSAVKSANVSF 160


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 10  RKEMETSLENFPNFKSHLFDNYKLCSETSLTRLKSTKSLTNIKTLMKESNE 162
           +KE+E SLE+  +  S L  N    +E         KSL   +  +K S E
Sbjct: 434 KKEIEISLESQGDRMSQLLANITSINERKENLTDKRKSLWREEAKLKSSIE 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 930,442
Number of Sequences: 5004
Number of extensions: 13365
Number of successful extensions: 51
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)