Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17i22
         (304 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0365 + 24438155-24438361,24438484-24438672,24438786-244389...    31   0.13 
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    28   1.2  
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592...    27   2.1  
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042...    26   4.9  
08_01_0374 + 3301301-3301521,3301723-3301852,3301895-3301903,330...    25   8.6  

>05_05_0365 +
           24438155-24438361,24438484-24438672,24438786-24438948,
           24439044-24439465
          Length = 326

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = +1

Query: 91  TSLTRLKSTKSLTNIKTLMKESNETFFGSAHFES--DRLFSFTKLDEVCSLSPSL 249
           T LT++ + K+L ++K L+  S     G++H  S  DRL++FT LD    + P+L
Sbjct: 166 TELTQMFAAKNL-DLKDLVVLSAGHTIGTSHCFSFTDRLYNFTGLDNAHDIDPTL 219


>07_03_1772 +
           29411874-29413218,29413355-29413421,29413749-29413896,
           29415293-29415416,29416340-29416590,29416923-29418449,
           29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 40  FPNFKSHLFDNYKLCSETSLTRLKSTKSL 126
           FPNFK HL   ++ CS  S TR  S +SL
Sbjct: 469 FPNFKDHLC--FRNCSNASSTRHFSYRSL 495


>03_02_0147 -
           5923117-5923215,5923882-5924069,5924885-5924977,
           5925499-5925628,5925720-5925802,5925893-5925976,
           5926253-5926316,5926375-5926515,5926801-5926863,
           5926968-5927006,5927126-5927185,5927567-5927624,
           5927708-5928099
          Length = 497

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 58  HLFDNYKLCSETSLTRLKSTKSLTNIKTLMKESNETFF 171
           H++ NYK     SLT L   +S   ++  M    E +F
Sbjct: 369 HMYANYKAVQSLSLTTLNYERSSILLQYFMDNGEENYF 406


>02_03_0201 +
           16302797-16302799,16303949-16304084,16304163-16304250,
           16305531-16305683,16306647-16306809,16306906-16307090,
           16307164-16307337,16308055-16308200,16308369-16308492,
           16308608-16308788,16309302-16309371,16310155-16310196,
           16310276-16310394,16310474-16310672,16311442-16311573,
           16312435-16312538,16312641-16312820,16314000-16314090,
           16314100-16314139,16314225-16314364,16314500-16314660,
           16314897-16315020,16315104-16315255
          Length = 968

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 148 KESNETFFGSA--HFESDRLFSFTKLDEVCSLSPSLMD 255
           K  N  F GSA  + + D+L+S   L+E+  + P L+D
Sbjct: 451 KSKNCNFEGSAVIYLKPDKLYSPENLNEIRPILPQLLD 488


>08_01_0374 +
           3301301-3301521,3301723-3301852,3301895-3301903,
           3302349-3302486,3302616-3302948,3303280-3303463,
           3303647-3303819
          Length = 395

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 95  DVSEHNL*LSNKCDLKFGKF 36
           D+   NL L+ KCDLK G F
Sbjct: 188 DLRPSNLLLNAKCDLKIGDF 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,107,633
Number of Sequences: 37544
Number of extensions: 60609
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)