Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17i22
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006777-4|AAK72310.1|  333|Caenorhabditis elegans Hypothetical ...    29   0.85 
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AC087081-12|AAK66039.2|  324|Caenorhabditis elegans Hypothetical...    27   2.6  
Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AC025726-33|AAY43985.1|  281|Caenorhabditis elegans Hypothetical...    27   3.4  
Z54237-1|CAA90987.2|  445|Caenorhabditis elegans Hypothetical pr...    26   4.5  
AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical ...    26   4.5  
AC006684-7|AAF39961.1|  219|Caenorhabditis elegans Hypothetical ...    25   7.9  

>AC006777-4|AAK72310.1|  333|Caenorhabditis elegans Hypothetical
           protein Y46H3D.7 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = +1

Query: 94  SLTRLKSTKSLTNIKTLMKESNETFFGSAHFESD-------RLFSFTKLDEVCSLSPSLM 252
           SL + K  K+ ++ KT+++E NE +        +       +L  F ++D+VCS+  SL+
Sbjct: 77  SLVKSKKQKTSSSEKTILEELNEAYQNLLDLRKETFRNQEAKLTYFEEMDDVCSVDLSLV 136


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 88  ETSLTRLKSTKSLTNIKTLMKESNETFFGSAHFE---SDRLFSFTKLDEVCSLSPS 246
           ET +T     ++LTN+KT + E + +     H +   S+RL   + + E  S +PS
Sbjct: 341 ETLVTEQNEVQNLTNLKTSLAEDSNSNTSETHNKNETSERLVKESFVSEGTSTTPS 396


>AC087081-12|AAK66039.2|  324|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.17 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 4   DERKEMETSLENFPNFKSHLFDNYKL 81
           D++ E  T L+ + N K+  FDNY+L
Sbjct: 200 DDQFEQITQLDQWKNTKNFCFDNYEL 225


>Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical
           protein F39H11.3 protein.
          Length = 588

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 4   DERKEMETSLENFPNFKSHLFDNYKLCSETSLTRL 108
           D R E  T ++ FPN     FD +K+ S++S  RL
Sbjct: 291 DARNE-GTPIQTFPNSLHRYFDKWKINSQSSPYRL 324


>AC025726-33|AAY43985.1|  281|Caenorhabditis elegans Hypothetical
           protein Y71G12B.2 protein.
          Length = 281

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 1   YDERKEMETS-LENFPNFKSHLFDNYKLCSETSLTRLKSTKSLTNIKTLMKESNET 165
           Y+ RK +    L+   +F S    N KLCS++    + ST+ +  I ++ ++SN +
Sbjct: 21  YEARKSLNCKKLDTMVSFSSC---NLKLCSKSDQFLVTSTRHVAQIISIAEQSNSS 73


>Z54237-1|CAA90987.2|  445|Caenorhabditis elegans Hypothetical
           protein T11B7.1 protein.
          Length = 445

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 4   DERKEMETSLENFPNFKSHLFDNYKLCSETSLTRLKSTKSLTNIKTLMKESN 159
           D R+ +   +    N  S+L DNY         +++  K L N+K++    N
Sbjct: 109 DMRQALSVKIYTLENECSNLQDNYADLQNDFEVQIEKFKKLQNLKSIQNHEN 160


>AF016688-1|AAB66077.3|  700|Caenorhabditis elegans Hypothetical
           protein F18A12.5 protein.
          Length = 700

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 7   ERKEMETSLENFPNFKSHLFDNYK 78
           +RKE+   L+++ +FK+HL + Y+
Sbjct: 243 DRKELSDDLKDYSDFKNHLKEFYQ 266


>AC006684-7|AAF39961.1|  219|Caenorhabditis elegans Hypothetical
           protein T02H6.4 protein.
          Length = 219

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 43  PNFKSHLFDNYKLCSETSLTRLKSTKS 123
           P  + H+F   K+CS+T  T+ +STK+
Sbjct: 124 PEVRHHVF---KICSKTRSTKTRSTKT 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,985,277
Number of Sequences: 27780
Number of extensions: 69718
Number of successful extensions: 247
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)