Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17i19
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50066-1|AAA93437.2|  378|Caenorhabditis elegans Resistance to i...    32   0.35 
U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily ass...    29   2.4  
L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical...    27   7.5  

>U50066-1|AAA93437.2|  378|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 3 protein.
          Length = 378

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 426 HDKMPTEEVLGPRKTMLILVIVVGCFAMLWPRILSPLILG 545
           +D    E  +   K  L+  ++V CFAML+P +  P+++G
Sbjct: 28  YDDYDEEGGISGWKLGLVFGVIVVCFAMLYPTLFHPMLMG 67


>U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform b protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 444 EEVLGPRKTMLILVIVVGCFAMLWPRILSPLILGHTREQL 563
           E  +  +K M  L+IVV CF++ W  + + L+L   + ++
Sbjct: 252 ETKMATQKLMRTLIIVVACFSLCWFPLETYLLLNELKPEI 291


>L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical
           protein F54F2.7 protein.
          Length = 157

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 65  VNIGTAVRSTSDFTTRSRAGGWEGKKSA*LFE*DTRLCHFE 187
           V+ GT  +  +D +T   +G  +GKK A + + D++LC F+
Sbjct: 50  VDFGTTKKHGADRSTNQVSG--KGKKGALILQPDSKLCTFK 88


>AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical
           protein Y18H1A.9 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 7   VPSSAHRAPYARLPNVNSLCQYW 75
           +PS+ HRAP  R  + +SLC  W
Sbjct: 442 LPSNMHRAPAKRCIDHDSLCPSW 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,569,110
Number of Sequences: 27780
Number of extensions: 359958
Number of successful extensions: 1040
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)