Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17i14
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    29   0.81 
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    28   1.4  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   4.3  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   9.9  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   9.9  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +1

Query: 355  TNSNIEIQGSITSHI*GQAAITRHL---ISPDKKFVLLVHQTGIGLDTLGLTV 504
            T  ++ I+    S+  GQAA+   +   I P +K + +V +TG G  T+GLT+
Sbjct: 1176 TLGHVSIKNLTVSYSIGQAAVLEDINLEILPKEK-IAIVGRTGSGKSTMGLTL 1227


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 253 VFEFVALFILGKIEYTTQ-PTCFTANIHEYINVQLRMLYTLHKYYRELIAL*EPKFNL 83
           +F+ V+L +   +    Q  T +  ++ E++  QL  +  L +Y  EL +L  PK+NL
Sbjct: 425 IFKCVSLIMQQTLREEKQLVTDYFTSLWEFLGFQLIYMGELFEYVPELNSLLSPKYNL 482


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 198 GCVVYSIFPKINSATNSN 251
           GC++YSIF K  S  N+N
Sbjct: 244 GCLIYSIFNKNQSIINAN 261


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 430  ISPDKKFVLLVHQTGIGLDTLGLTV 504
            I+P +K V +V +TG G  TLGLT+
Sbjct: 1236 INPSEK-VAVVGRTGSGKSTLGLTL 1259


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 337 EYSSLKTNSNIEIQGSITSHI*GQAAITRHLI-SPDKKFVLLVHQTGIGLDTL 492
           E  SL+   N +   S T+++ G+       + S D KFV L + T IG+ +L
Sbjct: 2   EVGSLEVKKNDKDPWSKTAYLGGRLVSKIPAVYSNDNKFVFLTYDTFIGIFSL 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,526
Number of Sequences: 5004
Number of extensions: 49796
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)