Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17i13
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    28   0.67 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.2  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   2.1  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    27   2.1  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   2.7  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    25   8.3  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   8.3  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 185 SPDHDL*FFQLHHWVLSHIPPNICHYQHFQKTYLFDYKQNKASLLIDK--KLKQFSCLKK 12
           S D  L  F LH + L     ++  Y H  +  +    Q+   L++D+   L +FS L K
Sbjct: 265 SGDSSLKSFSLHFFALQFFSTSLIQYTHICRKCVITILQSYQQLIVDQPANLLKFSLLSK 324


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +2

Query: 149  DEVGRTIGHGLVKNKLAACVNSIPGITSIYEWKNEINEDKETLLMIK 289
            DE+ R +  G+V NK +A  +S+    ++YE+   + ++KET+  +K
Sbjct: 1810 DELCRRLSLGIVANKQSASQSSLIFCYNVYEF---VVKEKETVAALK 1853


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 143 VLSHIPPNICHYQHFQKTYLFDYKQNKASLLIDKKLKQ 30
           +LSH PPNI  Y  FQK YL  +   K  +L+     Q
Sbjct: 840 LLSHYPPNII-YATFQK-YLSSFINRKFGVLLSSSFIQ 875


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 257  NEDKETLLMIKTRTSQVDKLTEYVRSNHPYEVCEVISVPIKNG 385
            N + + LL +    +   ++ EY+     Y+V E+  + I+NG
Sbjct: 1017 NANLQNLLFLTAIKADKSRVMEYIDKLDKYDVDEIAEIAIENG 1059


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 480 TIIFILKTH*QLINLYSHSGTISPIHFRYGGLPFFMGTDITS 355
           T++ IL T   L   Y  SGT +P  FR+ GL   + T  TS
Sbjct: 768 TLLRILTTRCMLSAEYFCSGTFAPPDFRHYGLASPIYTHFTS 809


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +2

Query: 245  KNEINEDKETLL-MIKTRTSQVDKLTEYVRSNHPYEVCEV 361
            K E NE  ++L   I T+ +++DKLT+Y+ S++  E+ E+
Sbjct: 973  KAEFNEQCKSLQETIVTKDAELDKLTKYI-SDYKTEIQEM 1011


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -3

Query: 439 SLFSFWHNISNPFQVWWITVLYGY----RYNLAYFVWMI 335
           +L  F H++S      W TVL+ +     + + Y +W+I
Sbjct: 31  ALAVFLHSVSLTLTASWYTVLWAFLPFWPFLIVYLIWLI 69


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 254  FHFSTHK*MLFREWSLHRQQAYSSPDHDL*FFQLHHWVLSHIPPN 120
            F F+T K   +  W +  ++   +  HD   + L H+VL ++P N
Sbjct: 1291 FGFNT-KLSEYVNWRIALERFVINESHDSALYPLLHFVLDNLPAN 1334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,075
Number of Sequences: 5004
Number of extensions: 42022
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)