Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17i12
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac...    29   0.40 
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    29   0.53 
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    28   0.93 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   1.2  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   2.8  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   2.8  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   3.7  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   8.6  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   8.6  

>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 248 VMAEELQKVHLFYDDINKIKVLEENVLKDTEDLRDTCKEYENKVQN 385
           +++  +Q     Y D++ I VL++ +  +T  L +  K YE   QN
Sbjct: 87  LLSSNMQLEQQLYSDLDHINVLQQELKVETARLENEQKSYEEMKQN 132


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -2

Query: 413 LTASL*FFQNFAPYFRTPYRCPLN----LQYLSKHSPQEPL 303
           LT+++ +  N+  Y ++PY+ P N    +QY   HSPQ  +
Sbjct: 175 LTSNVAYPPNYNNYLKSPYQQPTNFPPEIQYNYSHSPQHSI 215


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 305 KVLEENVLKDTEDLRDTCKEYENKVQNF 388
           K L +N   D   L  TC +Y N VQNF
Sbjct: 165 KQLLQNADTDLSKLEKTCVQYMNSVQNF 192


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
 Frame = +2

Query: 263  LQKVH-----LFYDDINKIKVLEENVLKDTEDLRDTCKEYENKVQNFEXXXXXXXXXXXX 427
            LQK+H     L  +  ++++  +E +  D   +++   E      N+E            
Sbjct: 1486 LQKLHSESLSLMENIKSQLQEAKEKIQVDESTIQELDHEITASKNNYEGKLNDKDSIIRD 1545

Query: 428  XGDNVENKKMAAIGAMNLLKSIAKDKESEQLKLQAEINDXTSLLEQIDXE 577
              +N+E          + +K ++ +KESE L+  + + D      Q++ E
Sbjct: 1546 LSENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRLADLEYHKSQVESE 1595


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 473  MNLLKSIAKDKESEQLKLQAEINDXTSLLEQ 565
            + LLK + K  E  + K+Q+E+ D T L E+
Sbjct: 1252 IELLKRVVKQAEEFKNKMQSEVCDPTQLSEK 1282


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 248 VMAEELQKVHLFYDDIN-KIKVLEENVLKDTEDLRDTCKEYENKVQNFE 391
           V  ++++   L +D ++ KI+  ++   K  EDLR+   +YE  ++ FE
Sbjct: 138 VKEKKMENRRLVFDALSTKIQKAKKEESKLEEDLRNARAKYEESLEEFE 186


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 479 LLKSIAKDKESEQLKLQAEINDXTSLLEQIDXEYDTLQ 592
           L   I +   +EQLKL AE+    S L Q+    D LQ
Sbjct: 486 LAAPIPQVASAEQLKLAAEVPKLESQLSQVKKSNDDLQ 523



 Score = 26.2 bits (55), Expect = 3.7
 Identities = 25/107 (23%), Positives = 40/107 (37%)
 Frame = +2

Query: 257 EELQKVHLFYDDINKIKVLEENVLKDTEDLRDTCKEYENKVQNFEXXXXXXXXXXXXXGD 436
           EEL K      DI   K   E V ++   L  T     N +Q                 +
Sbjct: 549 EELAKAKQISLDIETNKAQTEQVNREYSILEATL----NALQKQNKQKGEVLEQVVAESE 604

Query: 437 NVENKKMAAIGAMNLLKSIAKDKESEQLKLQAEINDXTSLLEQIDXE 577
             +N   ++  ++  LKS   DKE    +L  ++++ T  L  +D E
Sbjct: 605 AAKNMVESSNASIQQLKSEVADKEQTLAQLHLQLDEMTQRLVSLDEE 651


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 473 MNLLKSIAKDKESEQLKLQAEINDXTSLLEQIDXEYDTLQ 592
           +N   S  ++ ++E+ KLQ ++N+  SLL + +    TL+
Sbjct: 636 LNAQLSQLENLQNEERKLQEKVNEHESLLSRTNDILSTLR 675


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 21/118 (17%), Positives = 44/118 (37%)
 Frame = +2

Query: 251  MAEELQKVHLFYDDINKIKVLEENVLKDTEDLRDTCKEYENKVQNFEXXXXXXXXXXXXX 430
            +  EL+K     + +  ++   + +  D   L +   +     ++F+             
Sbjct: 731  LLSELEKSKSLNNSLAALESKNKKLENDLNLLTEKLNKKNADTESFKNTIREAELSKKAL 790

Query: 431  GDNVENKKMAAIGAMNLLKSIAKDKESEQLKLQAEINDXTSLLEQIDXEYDTLQILEA 604
             DN+ NK+       N L   +   +  Q +L  + N   +L E+I    D L  +E+
Sbjct: 791  NDNLGNKENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLNERISAAADELSSMES 848


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,219
Number of Sequences: 5004
Number of extensions: 29855
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)