Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17i02
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 247 1e-66
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 202 3e-53
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 173 3e-44
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 31 0.22
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 29 0.68
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.1
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 3.6
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.8
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 25 8.4
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 8.4
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 247 bits (605), Expect = 1e-66
Identities = 111/157 (70%), Positives = 140/157 (89%)
Frame = +1
Query: 238 NIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGSGE 417
+IK+F+G+SHP+LA+K+ R+G+ LGKV ++SN ET V IGESVR EDV+I+Q+G G
Sbjct: 5 SIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTGCGS 64
Query: 418 INDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVSGAD 597
IND+LMELLIMINAC+ ASA R+TA+IPCFPYARQDKKDKSRAPITA+LVAN+L +G +
Sbjct: 65 INDHLMELLIMINACRSASARRITAIIPCFPYARQDKKDKSRAPITARLVANMLQTAGCN 124
Query: 598 HIITMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENI 708
HIITMDLHASQIQGFF++PVDNL+AEP+VL++I+ENI
Sbjct: 125 HIITMDLHASQIQGFFNVPVDNLYAEPSVLRYIRENI 161
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 202 bits (494), Expect = 3e-53
Identities = 94/166 (56%), Positives = 126/166 (75%)
Frame = +1
Query: 232 MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 411
M + + G SHP+L I +RLGI V K+F+N ET VEI ESVR +DV+I+QSGS
Sbjct: 1 MKSATIIGGGSHPELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGS 60
Query: 412 GEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVSG 591
+ND+LMELLI+I+ACK SA R+TAV+P FPY++Q K K R ITA++VAN+L+V+G
Sbjct: 61 STVNDSLMELLIIISACKGGSAKRITAVMPYFPYSKQSKMRKYRDAITARMVANLLTVAG 120
Query: 592 ADHIITMDLHASQIQGFFDIPVDNLFAEPAVLKWIKENIPDWKTSI 729
DHIIT+DLHASQ+QGFF PVDNL+AEP + +WI+ N+ DW+ ++
Sbjct: 121 VDHIITLDLHASQMQGFFTRPVDNLYAEPNIAEWIRRNVDDWEEAV 166
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 173 bits (420), Expect = 3e-44
Identities = 97/190 (51%), Positives = 122/190 (64%), Gaps = 24/190 (12%)
Frame = +1
Query: 232 MPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSGS 411
M N+ VF SHP L + I + L +D+G+V KFSN ET V I +SVRG DVYIV S
Sbjct: 1 MKNLVVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPAS 60
Query: 412 GEINDNLMELLIMINACKIASASRVTAVIPCFPYARQ-DKK-DKSRAPI----------- 552
G++ND+LMELLIMI+ACK ASA +VTAV+P FPY+RQ D+K S AP+
Sbjct: 61 GQVNDHLMELLIMISACKTASAKKVTAVLPVFPYSRQPDQKFSFSGAPLSDLQDAVVPCK 120
Query: 553 -----------TAKLVANILSVSGADHIITMDLHASQIQGFFDIPVDNLFAEPAVLKWIK 699
+ LVA++L SGADHIITMDLH Q QGFFDIPVDNLF P + +I
Sbjct: 121 KQTGYHPWIAQSGTLVADLLMCSGADHIITMDLHDPQFQGFFDIPVDNLFGRPLLKHYIS 180
Query: 700 ENIPDWKTSI 729
NIP++ ++
Sbjct: 181 LNIPNYHNAV 190
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 30.7 bits (66), Expect = 0.22
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 492 RHTLLPVRAARQKRQEQSPDHG--QTRCQHPFSVWSRSHHHYGSSCVANSRIL 644
R TL P+ + +Q+ +QSP G Q Q P SV S HY + V ++L
Sbjct: 59 RSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQPHYAEAIVPIQQVL 111
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 29.1 bits (62), Expect = 0.68
Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 4/136 (2%)
Frame = +1
Query: 316 KVVTKKFSNMETCVEIGESV--RGEDVYIVQSGSGEINDNLMELLIMINACKIASASRVT 489
+VVTK S++ C+ G S+ R D+ I + + L+I++ + T
Sbjct: 120 QVVTKNTSHLYDCIRSGVSICNRLLDMEIFEPAISLLMKTHKNLIILLTYRDHDAIPTAT 179
Query: 490 AVIPCFPYARQDKKDKSRAP-ITAKLVANILSVSGADHI-ITMDLHASQIQGFFDIPVDN 663
+ P + + P + A NI ++ + + L SQI G ++N
Sbjct: 180 LLNPTLDVSEIQLESCLFVPMVPASYFLNIGTIVVTFQLNVLRCLSLSQINGLSLNTINN 239
Query: 664 LFAEPAVLKWIKENIP 711
L +E +WI+ + P
Sbjct: 240 LQSEDGPFQWIERSFP 255
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 499 PCFPYARQDKKDKSRAPITAKLVANILSVSGADHIITMDLHA 624
PCF Y + K+ K I + V N S G + +DLH+
Sbjct: 93 PCFSYCARLKEPKDLLEIGSVSVDNKCSTCGLFRVSRIDLHS 134
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 524 TKKTRAEPRSRPNSLPTSF-QCLEPITSSLWIFMRRKFKDSLIFR*ITSLP 673
T+ R PR P ++ +EP TS +W+F K K L ++ +T +P
Sbjct: 76 TQYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNK--LDYKAVTYVP 124
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 245 LMFGILVVKGRT*SNLFTTSSRVI 174
L+FGIL + G + L+TT +R+I
Sbjct: 319 LIFGILCIAGFVVNELYTTRTRII 342
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 181 LEDVVNKLDHVLPLTTRMPNIKVFSGSSHPDLAQKIVDRL 300
++D+VN L V+ +P I+ GS+ +AQK+ RL
Sbjct: 189 VQDIVNGLFSVIVTLGTIPIIRCPQGSAAEMVAQKLNQRL 228
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 574 ILSVSGADHIITMDLHASQIQGFFDIP 654
+LS S D ++ DLH S FF+ P
Sbjct: 36 LLSASTNDVLLVWDLHTSNKVAFFEAP 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,813
Number of Sequences: 5004
Number of extensions: 55853
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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