Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17i02
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 166 2e-41
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 86 2e-17
01_06_0553 + 30173964-30174349,30175124-30175439,30175523-301756... 41 0.001
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471... 31 0.71
02_05_0511 + 29644266-29644399,29644502-29644913,29645007-296450... 31 1.2
02_02_0467 - 10620976-10621299 30 1.6
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 29 3.8
02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522 29 5.0
07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913 28 6.6
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 28 6.6
01_06_0474 + 29604201-29604527,29604634-29604988,29605071-296054... 28 8.7
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 166 bits (403), Expect = 2e-41
Identities = 76/156 (48%), Positives = 114/156 (73%)
Frame = +1
Query: 229 RMPNIKVFSGSSHPDLAQKIVDRLGIDLGKVVTKKFSNMETCVEIGESVRGEDVYIVQSG 408
R +K+FSG+++ LAQ+I LG+DLGKV+ K+F++ E V++ ESVRG DV++VQ
Sbjct: 86 RDSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPT 145
Query: 409 SGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVS 588
+N+NLMEL +MI+AC+ ASA +T VIP F YAR D+K + R ITAKL AN+L+ +
Sbjct: 146 CSPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEA 205
Query: 589 GADHIITMDLHASQIQGFFDIPVDNLFAEPAVLKWI 696
G+D +I D+H++Q G+FDIPVD++ +P +L ++
Sbjct: 206 GSDRVIVCDIHSTQALGYFDIPVDHIHGQPVILDYL 241
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 86.2 bits (204), Expect = 2e-17
Identities = 43/89 (48%), Positives = 60/89 (67%)
Frame = +1
Query: 409 SGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPITAKLVANILSVS 588
S EI L L IN + ASA +TAVIP F YAR D+K + R I AKLVAN+++ +
Sbjct: 110 SQEIASYLGLELGKINIKRRASAKNITAVIPYFGYARADRKSQGRESIAAKLVANMITEA 169
Query: 589 GADHIITMDLHASQIQGFFDIPVDNLFAE 675
GA+ ++ DLH+SQ G+FDIPVD+++ +
Sbjct: 170 GANRVLVCDLHSSQAMGYFDIPVDHVYGQ 198
Score = 36.7 bits (81), Expect = 0.019
Identities = 13/31 (41%), Positives = 25/31 (80%)
Frame = +1
Query: 241 IKVFSGSSHPDLAQKIVDRLGIDLGKVVTKK 333
+++FSG+++P L+Q+I LG++LGK+ K+
Sbjct: 98 LRIFSGTANPSLSQEIASYLGLELGKINIKR 128
>01_06_0553 +
30173964-30174349,30175124-30175439,30175523-30175618,
30175710-30175778,30175878-30176006,30176165-30176264,
30177321-30177454
Length = 409
Score = 40.7 bits (91), Expect = 0.001
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 12/204 (5%)
Frame = +1
Query: 139 ATTSGLVSMKSTITLEDVVNKLDHVLPLTTRM---PNIKVFSGSSHPDLAQKIVDRLG-I 306
AT S +VS S I L V V +T + N+ +F +LA+++V R I
Sbjct: 62 ATGSSIVSNASGIHLAAPVLAPLAVPKMTGAVGAHKNVLLFHCEEMRELAEQVVARNDDI 121
Query: 307 DLGKVVTKKFSN--METCVEIGESVRGEDVYIVQSGSGEINDNLMELLIMINACKIASAS 480
+L + + F++ + ++RG+ V + S S + E L +I A S
Sbjct: 122 ELRSISWRTFADGFPNLFISNAHTIRGQHVAFLASFSSP--SVIFEQLSIIYALPKLFIS 179
Query: 481 RVTAVIPCFPYA----RQDKKDKSRAPITAKLVANI-LSVSGADHIITMDLHASQIQGFF 645
T ++P FP +D+ D + A A++++NI +S G ++ D+HA Q + +F
Sbjct: 180 SFTLILPFFPTGTSERMEDEGDVATAFTLARILSNIPISRGGPSSLVIFDIHALQERFYF 239
Query: 646 DIPVDNLFAEP-AVLKWIKENIPD 714
V F +LK + +PD
Sbjct: 240 GDSVLPCFESGIPLLKSRLQELPD 263
>12_02_0699 +
22245933-22246213,22246493-22246575,22246844-22247125,
22248725-22248986,22250146-22251781,22251910-22252416
Length = 1016
Score = 31.5 bits (68), Expect = 0.71
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 540 QSPDHGQTRCQHPFSVWSRSHHHYGS 617
Q PDH TRC++ VW R H + S
Sbjct: 12 QKPDHPPTRCRYQAKVWFRRHCFFQS 37
>02_05_0511 +
29644266-29644399,29644502-29644913,29645007-29645075,
29645169-29645333,29645771-29645870,29645906-29646081
Length = 351
Score = 30.7 bits (66), Expect = 1.2
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Frame = +1
Query: 373 VRGEDVYIVQSGSGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPI 552
+RG+ V + S S + E + +I A + T V+P FP ++ ++
Sbjct: 62 IRGQHVAFLASFSSP--SVIFEQISVIFALPKLFIASFTLVLPFFPTGSFERVEEEGDVA 119
Query: 553 TAKLVANILSV-----SGADHIITMDLHASQIQGFFDIPVDNLFAE--PAVLKWIKENIP 711
TA +A ILS+ G ++ D+HA Q + +F V F P +L+ +++ +P
Sbjct: 120 TAFTLARILSMIPKSRGGPTSVVIYDIHALQERFYFGDDVLPCFETGIPLLLQRLRQ-LP 178
Query: 712 D 714
D
Sbjct: 179 D 179
>02_02_0467 - 10620976-10621299
Length = 107
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 540 QSPDHGQTRCQHPFSVWSRSHHHYGS 617
Q PDH TRC+ VW R H + S
Sbjct: 12 QKPDHPPTRCRSQAKVWFRRHCFFQS 37
>06_03_0099 + 16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 522 RQKRQEQSPDHGQTRCQ-HPFSVWSRSHHHYGS 617
R+K++ +SP H + + HP +S+ HH +G+
Sbjct: 1554 RKKQKPESPPHAHPQGRNHPVKFFSKMHHMFGT 1586
>02_04_0440 + 22954950-22955213,22955317-22956621,22956791-22957522
Length = 766
Score = 28.7 bits (61), Expect = 5.0
Identities = 28/85 (32%), Positives = 40/85 (47%)
Frame = +1
Query: 55 VALRTLIDKWTRQFK*FISVLSLRIAPLATTSGLVSMKSTITLEDVVNKLDHVLPLTTRM 234
+ L + K + K I+ L R P + L S + T+TL+DV L LP+ R
Sbjct: 117 LGLSQICQKMPQLDKALITALVERWRPETHSFHLASGEMTVTLQDVSMLL--ALPIDGR- 173
Query: 235 PNIKVFSGSSHPDLAQKIVDRLGID 309
V S + H D AQ ++D LG D
Sbjct: 174 ---PVCSTTDH-DYAQMVIDCLGHD 194
>07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913
Length = 213
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 504 LPVRAARQKRQEQSPDHGQTRCQHPFSVWSRSHHHYGS 617
LP + Q PDH RC+ VW R H + S
Sbjct: 12 LPKNLITRLGTPQKPDHPPIRCRSQAKVWFRRHCFFQS 49
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 28.3 bits (60), Expect = 6.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 519 ARQKRQEQSPDHGQTRCQHPFSVWSR 596
+ Q ++++PD +T C+ P VWS+
Sbjct: 487 SEQNSEDENPDSSRTACETPKWVWSK 512
>01_06_0474 +
29604201-29604527,29604634-29604988,29605071-29605411,
29606502-29606940,29607558-29607913
Length = 605
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 539 AEPRSRPNSLPTSFQCLEPITSSLWIFMR 625
AEP SRPNS ++ C+ P S+ + R
Sbjct: 382 AEPPSRPNSFTSTSSCMAPSRRSMAVRSR 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,990,324
Number of Sequences: 37544
Number of extensions: 383531
Number of successful extensions: 971
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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