Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17h24
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97407-7|AAB52480.2|  457|Caenorhabditis elegans Prion-like-(q/n...    27   5.7  
U53141-4|AAA96106.1|  528|Caenorhabditis elegans Mutator protein...    27   9.9  
U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical p...    27   9.9  

>U97407-7|AAB52480.2|  457|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
           isoform a protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 259 QTLPEAGSQQQRCCQPSDVPSPSSKGSRNP 348
           Q  P  G+Q Q  C P+ VP P  +  + P
Sbjct: 419 QHYPAPGAQPQYACPPNSVPQPQQQQQQWP 448


>U53141-4|AAA96106.1|  528|Caenorhabditis elegans Mutator protein 14
           protein.
          Length = 528

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 442 NEYSLQTRRL*TSYNQNQPGSIGFSFVGTIKLGSGSPWS 326
           N  +LQ+     +YN+N  G+I  + +    LG   PWS
Sbjct: 280 NLENLQSCFFSATYNKNANGTIALTVLQMRMLGEDDPWS 318


>U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical
           protein C26E6.3 protein.
          Length = 321

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 342 PAPLGAGRGHI*RLTASLLLTSCLGERLVDV 250
           P   GA  G I ++ ASL L  CL ++L D+
Sbjct: 262 PRGQGAAPGQIVKMRASLALKQCLPDQLKDL 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,829,366
Number of Sequences: 27780
Number of extensions: 258571
Number of successful extensions: 881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)