Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17h23
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 144 5e-35
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 144 6e-35
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 142 3e-34
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 110 7e-25
01_06_1093 + 34471262-34471334,34474526-34476759 29 3.9
12_02_0752 + 22784052-22784288,22784531-22784704,22784799-227849... 28 5.1
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 28 5.1
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 28 6.8
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 144 bits (349), Expect = 5e-35
Identities = 66/135 (48%), Positives = 92/135 (68%), Gaps = 3/135 (2%)
Frame = +1
Query: 220 LNLPFPKNKIFATYVWIDASGINLRSKDRILDKEPCDLEMVPKWSYDGSSTGQSDLKDSD 399
LNL KI A Y+WI SG++LRSK R L D +PKW+YDGSSTGQ+ +DS+
Sbjct: 10 LNLSDTTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSE 69
Query: 400 ITLLPVAVYRDPFRKSPHIIVLCETYSSEGLPTPTNHRVSSAITLS--KICDQEPWFGIE 573
+ L P A+++DPFRK +I+V+C+ Y+ G P PTN R ++A S ++ +EPW+GIE
Sbjct: 70 VILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIE 129
Query: 574 QEYTMFDRD-HWPLG 615
QEYT+ +D +WPLG
Sbjct: 130 QEYTLLQKDINWPLG 144
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 144 bits (348), Expect = 6e-35
Identities = 67/132 (50%), Positives = 91/132 (68%), Gaps = 3/132 (2%)
Frame = +1
Query: 229 PFPKNKIFATYVWIDASGINLRSKDRILDKEPCDLEMVPKWSYDGSSTGQSDLKDSDITL 408
PF +KI A Y+W+ +GI+LRSK R + K D +PKW+YDGSSTGQ+ +DS++ L
Sbjct: 813 PFT-DKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVIL 871
Query: 409 LPVAVYRDPFRKSPHIIVLCETYSSEGLPTPTNHRVSSAITLS--KICDQEPWFGIEQEY 582
P A+++DPFR +I+V+C+TY+ G P PTN R +A S K+ Q PWFGIEQEY
Sbjct: 872 YPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEY 931
Query: 583 TMFDRD-HWPLG 615
T+ RD +WPLG
Sbjct: 932 TLLQRDVNWPLG 943
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 142 bits (343), Expect = 3e-34
Identities = 64/135 (47%), Positives = 93/135 (68%), Gaps = 3/135 (2%)
Frame = +1
Query: 220 LNLPFPKNKIFATYVWIDASGINLRSKDRILDKEPCDLEMVPKWSYDGSSTGQSDLKDSD 399
LNL +KI A Y+W+ SGI+LRSK R + D+ +PKW+YDGSSTGQ+ +DS+
Sbjct: 10 LNLSDCSDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSE 69
Query: 400 ITLLPVAVYRDPFRKSPHIIVLCETYSSEGLPTPTNHRVSSAITLS--KICDQEPWFGIE 573
+ L P A+++DPFR+ +I+V+C+ Y+ +G P PTN R S+A S + + PW+GIE
Sbjct: 70 VILYPQAIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIE 129
Query: 574 QEYTMFDRD-HWPLG 615
QEYT+ +D +WPLG
Sbjct: 130 QEYTLLQKDVNWPLG 144
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 110 bits (265), Expect = 7e-25
Identities = 50/114 (43%), Positives = 76/114 (66%), Gaps = 3/114 (2%)
Frame = +1
Query: 283 INLRSKDRILDKEPCDLEMVPKWSYDGSSTGQSDLKDSDITLLPVAVYRDPFRKSPHIIV 462
++L+ + L D +PKW++DGSSTGQ+ DS++ L P A++RDPFRK +I+V
Sbjct: 58 LHLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILV 117
Query: 463 LCETYSSEGLPTPTNHRVSSAITLS--KICDQEPWFGIEQEYTMFDRD-HWPLG 615
+C+ Y+ G P PTN+R ++A S + +EPW+GIEQEYT+ + +WPLG
Sbjct: 118 MCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLG 171
>01_06_1093 + 34471262-34471334,34474526-34476759
Length = 768
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 268 IDASGINLRSKDRILDKEPCDLEMVPKWSYDGSSTGQSDLKDSDITLLPVAV 423
+D + +NL +D L + C E KW+Y G+ + S T P+ +
Sbjct: 631 VDDTKVNLDGEDDYLFRTVCPGEKTLKWNYGPELIGEHSINISADTFEPLPI 682
>12_02_0752 +
22784052-22784288,22784531-22784704,22784799-22784930,
22785062-22785439
Length = 306
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 280 GINLRSKDRILDKEPCDLEMVPKWSYDGSSTGQSDLKDSDITLLP 414
G+ R+ R LD+E + E+ P+ D S D+ S IT+LP
Sbjct: 2 GVVTRAMKRRLDEESSNPELAPRGGEDLISRLPDDIFTSIITILP 46
>07_01_0070 +
515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 352 SYDGSSTGQSDLKDSDITLLPVAVYRDPFRKSPHI 456
S DG+ +GQ DL +D L P PF+ SP +
Sbjct: 108 SLDGNRSGQQDLSSTDRMLFP----EKPFKSSPKL 138
>05_04_0122 +
18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 217 FLNLPFPKNKIFATYVWIDASGINLRSKDR 306
FLN P P+++ TY ++D + R K+R
Sbjct: 142 FLNCPMPEDERMQTYSYVDEQEVIGRDKER 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,987
Number of Sequences: 37544
Number of extensions: 324188
Number of successful extensions: 793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -