Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17h21
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    31   0.11 
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        31   0.11 
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    27   3.2  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   4.2  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   7.4  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   9.7  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    25   9.7  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   9.7  

>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 265 HITLVNSSQKPKNS*YCQTYMQH 333
           HIT+++ SQKP NS   + Y+QH
Sbjct: 662 HITMIHESQKPVNSRIWEQYLQH 684


>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 432 LDLYLERIHKLNVMCGRRPNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGSHIVLKF 608
           L+ Y+    K  +  G+    +++  Y PG GI+PH D  +F   +   S  S+  + F
Sbjct: 97  LNDYIPSDFKQRLWKGQDAEAIIMQVYNPGDGIIPHKDLEMFGDGVAIFSFLSNTTMIF 155


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 348 TQLSNRRLQNWGGVPHNK 401
           +QLS   L  W GVPH K
Sbjct: 32  SQLSKHLLPQWSGVPHRK 49


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/61 (22%), Positives = 23/61 (37%)
 Frame = +3

Query: 255 EPTAYYISKFITEAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGVPHNKGMIAETIPTWL 434
           + T+ Y+      A +  I+   Y+ P P+W   S     N          +   +PT L
Sbjct: 590 QSTSLYVQNSQPSASQLTIVDATYSQPPPRWESSSRDDKTNTSST--QPSQVDSLVPTQL 647

Query: 435 D 437
           D
Sbjct: 648 D 648


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -2

Query: 524  LSWCIFIYQYMVWSSTTHNI*FVNSFEI*V*PSRYCFCY-HSLIVWDTSPI 375
            + +CIF Y    W + +HN+       I      Y   Y     VWDTS +
Sbjct: 885  VGFCIFEYNSSSWRNISHNLISAEVQSILWVNETYSSMYLAGKFVWDTSDV 935


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 375 NWGGVPHNKGMIAETIPTWLDLYLERIHKLNVMCGRRPN 491
           N G  P N+ MI +  P W+D        +NV CG   N
Sbjct: 117 NIGKPPENEAMICDCRPHWVD-------GVNVACGHGSN 148


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 6   PTSDIKSQFTEIYRMTICIYY*VYAMYCC 92
           P SD +SQF+ +      +++ +Y + CC
Sbjct: 269 PDSDQESQFSRLPDERATMFFTIYELCCC 297


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 560 PDHNNNISGLAHSLKILGNQLQIMKKLRCN 649
           P+ +  +  LAH LKI  ++L + K LR N
Sbjct: 213 PNSDAEVLHLAHLLKIPQHELYVTKVLRTN 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,179
Number of Sequences: 5004
Number of extensions: 59817
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)