Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17h21
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0028 - 14262607-14262783,14262886-14262932,14263014-142632...   132   3e-31
04_04_1056 - 30447791-30447850,30448020-30448085,30448299-304485...    46   3e-05
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203...    33   0.27 
03_05_1059 - 30020877-30021539,30022367-30022375                       32   0.35 
11_06_0608 - 25442883-25443206,25443420-25443623,25443831-254438...    31   0.62 

>10_08_0028 -
           14262607-14262783,14262886-14262932,14263014-14263281,
           14263374-14263486,14264362-14264400,14264531-14264591,
           14264685-14264834
          Length = 284

 Score =  132 bits (318), Expect = 3e-31
 Identities = 56/117 (47%), Positives = 77/117 (65%)
 Frame = +3

Query: 258 PTAYYISKFITEAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGVPHNKGMIAETIPTWLD 437
           PT  Y+  FI++AE+  +L +IY AP PKW  L NRRLQNWGGV H KG++ + +P+WL 
Sbjct: 30  PTLLYVPGFISDAEQSQLLHHIYQAPAPKWKSLKNRRLQNWGGVVHEKGLLPQALPSWLT 89

Query: 438 LYLERIHKLNVMCGRRPNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGSHIVLKF 608
              +RI +   +     NHVL+NEY P QGIMPH DG  ++P +  IS+ S +V+ F
Sbjct: 90  KITDRICQWTGLFPSAINHVLINEYHPNQGIMPHQDGPAYFPVVAIISLASPVVIDF 146


>04_04_1056 -
           30447791-30447850,30448020-30448085,30448299-30448583,
           30448744-30448869,30449068-30449154,30449273-30449695
          Length = 348

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
 Frame = +3

Query: 258 PTAYYISKFITEAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGV-------PHNKGMIAE 416
           P  Y +  F+T AEEQ +L+ +   P   W  L+ RR+Q++G           +K  + E
Sbjct: 126 PGIYLVPDFVTAAEEQELLAAVDNRP---WKSLAKRRVQHYGFEFLYETRNVDSKQFLGE 182

Query: 417 TIPTWLDLYLERIHKL---NVMCGRRPNHVLVNEYTPGQGIMPHLD-GNLFYPTITTISV 584
            +P ++   +++I      N    +  + + VNEY  G G+ PH+D  + F   I ++S+
Sbjct: 183 -LPPFVSKIIDKIMSFPGANKCTSKLVDQLTVNEYPCGVGLSPHIDTHSAFEEMIFSLSL 241

Query: 585 GSHIVLKF 608
               +++F
Sbjct: 242 AGPCIMEF 249


>06_01_0275 +
           2029542-2029689,2029777-2030295,2030657-2030754,
           2031718-2032028,2032560-2032631,2032729-2033398
          Length = 605

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 411 AETIPTWLDLYLERIHKLNVMCGRR-PNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVG 587
           ++ +P+   + ++R+ + +V+     P+  +VN Y PG  I PH+D + F     T+S  
Sbjct: 270 SDPMPSLFKIMIKRLVRWHVLPKTCIPDSCIVNIYDPGDCIPPHIDSHDFVRPFCTVSFL 329

Query: 588 SHIVLKFLET 617
           S   + F  T
Sbjct: 330 SECNILFGST 339


>03_05_1059 - 30020877-30021539,30022367-30022375
          Length = 223

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 290 CDEFTNVICSRFSLYYYVIFNICYICHH-YSLVFI 189
           C  F ++ C R  ++   I  ICYIC H ++L FI
Sbjct: 134 CILFRSLFCFRLIIWLMFIIYICYICSHGFTLTFI 168


>11_06_0608 -
           25442883-25443206,25443420-25443623,25443831-25443859,
           25444335-25444557
          Length = 259

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 480 RRP--NHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGSHIVLKF 608
           R+P  + ++ N Y PG+GI  H+D   F   I  +S+ S  V+ F
Sbjct: 136 RKPLFDQMIANRYEPGEGICAHVDLMRFDDGIAIVSLESPCVMHF 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,844,695
Number of Sequences: 37544
Number of extensions: 342149
Number of successful extensions: 696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)