Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17h21
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73422-1|CAA97764.1| 160|Caenorhabditis elegans Hypothetical pr... 111 6e-25
Z37139-6|CAB63431.2| 591|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z83229-3|CAB05740.3| 369|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 28 6.8
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p... 27 9.0
U56963-11|AAB38127.1| 342|Caenorhabditis elegans Serpentine rec... 27 9.0
U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein ... 27 9.0
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 27 9.0
AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protei... 27 9.0
>Z73422-1|CAA97764.1| 160|Caenorhabditis elegans Hypothetical
protein B0564.2 protein.
Length = 160
Score = 111 bits (266), Expect = 6e-25
Identities = 60/128 (46%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Frame = +3
Query: 225 NIEDHIVIKAEPTAYYISKFITEAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGVPHNKG 404
NI+ IV A T YI +I E EE L S I AP+PKW L+NRRLQN+GGV
Sbjct: 10 NIKKFIVKSAPATMIYIPNWIDEEEENLYKSCIENAPQPKWRVLANRRLQNYGGVVGKTA 69
Query: 405 MI-AETIPTWLDLYLERIHKLNVMCGRRP-NHVLVNEYTPGQGIMPHLDGNLFYPTITTI 578
+I + P L + +I+ L + + P NHVLVNEY GQGIMPH DG F+ +TT+
Sbjct: 70 LIPTDDFPVELKYLMTKINDLGIF--KNPVNHVLVNEYEAGQGIMPHTDGPAFHRIVTTV 127
Query: 579 SVGSHIVL 602
++GSH +L
Sbjct: 128 TLGSHCLL 135
>Z37139-6|CAB63431.2| 591|Caenorhabditis elegans Hypothetical
protein C14B1.10 protein.
Length = 591
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 411 AETIPTWLDLYLERIHKLNVMCGRRPNHVLVNEYTPGQGIMPHLD-GNLFYPTITTISVG 587
A+ IP ++ ++R+ + RP+ V N Y G GI H D + F I +IS+
Sbjct: 194 ADPIPPVINSLIDRLISDKYIT-ERPDQVTANVYESGHGIPSHYDTHSAFDDPIVSISLL 252
Query: 588 SHIVLKF 608
S +V++F
Sbjct: 253 SDVVMEF 259
>Z83229-3|CAB05740.3| 369|Caenorhabditis elegans Hypothetical
protein F54F11.3 protein.
Length = 369
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 409 IIPLLCGTPPQFCNLRFDSCVHLGFGAAYMFDSISCSSASVMN 281
I+P L G+ + N F S V LGF A I SS S+ N
Sbjct: 303 IVPTLLGSVNAWRNFTFSSGVCLGFKAQVRLKIIKVSSVSIGN 345
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 333 PKPKWTQLSNRRLQNWGGVPHNKGMI 410
P P+ Q+ + +QN GG+PH +I
Sbjct: 753 PPPQHFQMDHSGMQNGGGIPHQHQLI 778
>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
protein F47C12.1 protein.
Length = 1827
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 418 VSAIIPLLCGTPPQFCNLRFDSCVHLGFG 332
+S P+ CG PQ N DS ++ FG
Sbjct: 277 ISTCQPIYCGAVPQIANGFVDSATNVSFG 305
>U56963-11|AAB38127.1| 342|Caenorhabditis elegans Serpentine
receptor, class v protein32 protein.
Length = 342
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 52 LFVFTIECMLCTVVYFTIHYY 114
L V ++ C+LC+V+Y ++ YY
Sbjct: 184 LIVVSLTCILCSVLYGSLFYY 204
>U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform b protein.
Length = 632
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 637 LFHYL*LVSKNFKTMCEPTDIVVMVG*N 554
L+ +L S +FK MC+P ++V G N
Sbjct: 61 LYQFLTSRSSSFKAMCKPNSVLVYTGGN 88
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 637 LFHYL*LVSKNFKTMCEPTDIVVMVG*N 554
L+ +L S +FK MC+P ++V G N
Sbjct: 480 LYQFLTSRSSSFKAMCKPNSVLVYTGGN 507
>AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (70.9 kD) alternative
variant b protein.
Length = 632
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 637 LFHYL*LVSKNFKTMCEPTDIVVMVG*N 554
L+ +L S +FK MC+P ++V G N
Sbjct: 61 LYQFLTSRSSSFKAMCKPNSVLVYTGGN 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,590,311
Number of Sequences: 27780
Number of extensions: 339296
Number of successful extensions: 724
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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