Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17h20
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    32   0.057
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos...    26   4.9  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   6.5  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.5  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   6.5  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   6.5  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   6.5  

>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +3

Query: 126 EYVLNMSNNS--ETSLSQRDKAAELPMELESIRAL---NACLQAYLEHIRNVKRNLLAMN 290
           E  L+++ NS  E     RD   E     + I+AL   N  LQ  LE ++N ++NL  MN
Sbjct: 307 EEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMN 366

Query: 291 DNY 299
            NY
Sbjct: 367 ANY 369


>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +3

Query: 147 NNSETSLSQRDKAAELPMELESIR 218
           NN  T+   R K AEL  ELESIR
Sbjct: 20  NNPLTASEFRAKKAELEAELESIR 43


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/70 (22%), Positives = 36/70 (51%)
 Frame = +3

Query: 135 LNMSNNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLED 314
           +N S  +ET  +QR    ++P + +   +++A +  +     N       M D +RD+ +
Sbjct: 157 INESYKNETKSNQR-LGEDVPSKKKYPHSMDAEISKFKWDSNNNNDWSSLMKDCFRDVVN 215

Query: 315 VNRQWQEVVE 344
            NR+ +E+++
Sbjct: 216 NNRKMKEIIK 225


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 185 SRATYGAGIHKGLECLPPGLFRTH*KCQ 268
           +R+T+G G    ++CLPP  + T   C+
Sbjct: 346 TRSTWGIGSEHDMQCLPPS-YETMGPCE 372


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 147 NNSETSLSQRDKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAMNDNYRDLEDVNRQ 326
           +N +   S RD AA L      +  +    +AY E +   K+  L +  N    E VNR+
Sbjct: 518 SNDDLQKSSRDVAANLSDVKAKVSEIR---KAYDEELAKAKQISLDIETNKAQTEQVNRE 574

Query: 327 W 329
           +
Sbjct: 575 Y 575


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 243 YLEHIRNVKRNLLAMNDNYRDLED----VNRQWQEVVEFRRE 356
           Y + +RN ++ LL  N+ Y  LED    +  +  ++ E+ RE
Sbjct: 62  YEQQLRNSEKKLLQSNERYDLLEDERKLLENELSQIKEYLRE 103


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 177  DKAAELPMELESIRALNACLQAYLEHIRNVKRNLLAM-NDNYRDLEDVNRQ 326
            +  A L  E+E  RA N  LQ+ L  + +   NLL + +   + LED   Q
Sbjct: 1025 ENIASLQTEIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQ 1075


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,935
Number of Sequences: 5004
Number of extensions: 52386
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)