Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17h19
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694... 142 3e-34
04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196 60 1e-09
03_05_0219 - 22059388-22059729,22059838-22059999 56 3e-08
04_04_1628 + 34874688-34874915,34875182-34875232,34875532-348756... 52 3e-07
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 32 0.32
07_01_0036 + 298626-299573,299973-300239 30 1.3
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000... 29 3.0
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 29 4.0
07_03_0789 + 21529392-21529490,21529592-21529791,21529948-21530149 29 4.0
03_05_0841 - 28104977-28105142,28105439-28105502,28105586-281056... 28 5.2
06_01_0155 + 1152607-1152721,1152781-1154129 28 6.9
06_01_0152 + 1136202-1136316,1136376-1137583 28 6.9
01_07_0228 - 42154400-42154498,42155120-42155196,42156341-421564... 27 9.2
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 27 9.2
>04_04_0711 -
27468045-27468264,27468831-27468935,27469431-27469489,
27469566-27470009,27470123-27470187,27470871-27471066,
27471429-27471590
Length = 416
Score = 142 bits (343), Expect = 3e-34
Identities = 67/117 (57%), Positives = 84/117 (71%), Gaps = 4/117 (3%)
Frame = +1
Query: 190 PIVITTWSFTNSTVKAWEVLNNGG----TALDAVEQGASVCEDQQCDGTVGYGGSPDENG 357
P+V++TW F + AWEV++ G +A+DAV G S CE +CDGTVG GGSPDENG
Sbjct: 71 PVVVSTWPFREAVRAAWEVVSASGGAGCSAVDAVVAGCSACEVLRCDGTVGPGGSPDENG 130
Query: 358 ETTLDALIMNGRTMNIGAVGGLRRIKHAISVARHVLDHTKHSFLVGELATQFAVEMG 528
ETTLDALIM+G TM IGAV +R +K I A+ V+DHT+H+ LVGE AT FA+ MG
Sbjct: 131 ETTLDALIMDGTTMEIGAVAAMRYVKDGIRAAKLVMDHTEHTLLVGEKATSFAISMG 187
>04_04_1391 + 33195508-33195903,33197506-33197592,33197678-33198196
Length = 333
Score = 60.1 bits (139), Expect = 1e-09
Identities = 34/98 (34%), Positives = 52/98 (53%)
Frame = +1
Query: 241 EVLNNGGTALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTMNIGAVGG 420
+ L +G ALD VE E + G G + G ++A IM+GR GAV G
Sbjct: 39 DALRSGAAALDVVEAVVRELESDPFFNS-GRGSALTRLGTVEMEASIMDGRGRRCGAVSG 97
Query: 421 LRRIKHAISVARHVLDHTKHSFLVGELATQFAVEMGFQ 534
+ +K+ +S+AR V+D + HS+L + A QFA + G +
Sbjct: 98 VSTVKNPVSLARLVMDKSPHSYLAFDGAEQFARDQGLE 135
>03_05_0219 - 22059388-22059729,22059838-22059999
Length = 167
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +1
Query: 235 AWEVLNNGGTALDAVEQGASVCEDQQCDG-TVGYGGSPDENGETTLDALIMNGRTMNIGA 411
A L +G ALD VE V E + C G G +G ++A +M+G T+ GA
Sbjct: 37 ATAALRSGRAALDVVE--LVVRELENCPHYNAGVGSVLTADGTVEMEAAVMDGNTLRCGA 94
Query: 412 VGGLRRIKHAISVARHVLDHTKHSFLVGELATQFAVE 522
V GL + +A+S+AR V++ T H +L + A FA E
Sbjct: 95 VSGLSTVVNAVSLARLVMEKTPHIYLAFDGAEAFARE 131
>04_04_1628 +
34874688-34874915,34875182-34875232,34875532-34875652,
34875739-34875788,34876395-34876524,34877007-34877170,
34877262-34877300,34877301-34877464,34877808-34877931,
34878002-34878103,34878208-34878297
Length = 420
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +1
Query: 244 VLNNG-GTALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTMNIGAVGG 420
VL G GT+LDAV V ED G G + E+G DA IM+G T GAVG
Sbjct: 73 VLREGNGTSLDAVAAAIQVLEDDPITNA-GRGSNLTESGHVECDASIMDGSTTTFGAVGA 131
Query: 421 LRRIKHAISVARHV 462
++ +K+ I +A H+
Sbjct: 132 VQGVKNPIQIALHL 145
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -2
Query: 392 LPFIIRASNVVSPFSSGLPPYP---TVPSHCWSSQTDAPCSTASNAVPPLFRTSQAL 231
LPF +R + +SPFS+ PP P T +H SS + P TA+ + P+ TS+ L
Sbjct: 30 LPFPLRPPHRLSPFSAP-PPEPHRLTYRTHSTSSSSRTP--TAAGLLSPVISTSRTL 83
>07_01_0036 + 298626-299573,299973-300239
Length = 404
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 316 DGTVGYGGSPDENGETTLDALIMNGRTMNIGAVGGLRRI 432
+G GYG P E ++ L+++GR M GG+RR+
Sbjct: 222 EGCGGYGMVPFEVSAPNVEELVLSGRNMVAVEKGGVRRL 260
>03_06_0317 +
33097257-33097336,33098500-33098926,33100007-33100078,
33100490-33100600,33100973-33101173,33102157-33102222
Length = 318
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 232 KAWEVLNNGGTALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMN 387
+ W++ N G ++ V++ + D++ DG V PD N + +A+ N
Sbjct: 15 RRWDLTNKGAESIPMVKEAVEMSTDEESDGVVIC--PPDGNNDDREEAISSN 64
>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
Length = 1032
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 406 GAVGGLRRIKHAISVARHVLDHTKHSFLVGELATQFAVEMGFQEESLTTSVSKNYG*NGI 585
G + GL AI ARH+ DHT++ ++ +A +G + + V N+ I
Sbjct: 806 GLLAGLEEWNMAIKCARHIDDHTRNIKVIEVVAE----NLGEEARRIGELVDSNF---SI 858
Query: 586 MNIIVNQI 609
+ + VNQ+
Sbjct: 859 IGVEVNQV 866
>07_03_0789 + 21529392-21529490,21529592-21529791,21529948-21530149
Length = 166
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 534 LKAHFYCKLGGKLTN*KGMFCVVQYMSSN 448
L H + +GG L G+FC+V Y S+N
Sbjct: 127 LPRHHFLSIGGILCFVHGLFCLVYYASAN 155
>03_05_0841 -
28104977-28105142,28105439-28105502,28105586-28105655,
28105743-28105852,28106217-28106295,28106610-28106691,
28106791-28106879,28107351-28107425,28107728-28107862,
28108018-28108163,28108380-28108491
Length = 375
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +1
Query: 73 HRFN--VCISKVLADYKMNQIGIFLTYVLVYLTNVCSETNIPIVITTWSFTNSTVKAWEV 246
H F+ C + + D ++ +G L VL + + C +P + + + V+A +
Sbjct: 152 HTFSKFACNAHTICDPELRPLGTGLYPVLSIINHSC----VPNAVLIFEGRTAYVRALQP 207
Query: 247 L--NNGGTALDAVEQGASVCEDQQCDG 321
+ N + DA+ +G C DQ+CDG
Sbjct: 208 ISKNEEDSEEDALLEGYR-CNDQKCDG 233
>06_01_0155 + 1152607-1152721,1152781-1154129
Length = 487
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 256 GGTALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTM 399
G A + + + C + QC V YG +G +DAL +N T+
Sbjct: 207 GSAACGELGRYGAGCSNNQCQYFVDYGDGRATSGTYMVDALTLNPSTV 254
>06_01_0152 + 1136202-1136316,1136376-1137583
Length = 440
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 256 GGTALDAVEQGASVCEDQQCDGTVGYGGSPDENGETTLDALIMNGRTM 399
G A + + + C + QC V YG +G +DAL +N T+
Sbjct: 207 GSAACGELGRYGAGCSNNQCQYFVDYGDGRATSGTYMVDALTLNPSTV 254
>01_07_0228 -
42154400-42154498,42155120-42155196,42156341-42156425,
42156511-42156956,42157070-42157194,42157273-42157523
Length = 360
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 358 ETTLDALIMNGRTMNIGAVGGLRRIKHAISVARHVLDHT----KHSFLVGELATQF 513
ETT+D +I G M + + L KH +V +LD+T K SF+V ++ F
Sbjct: 3 ETTVDVMIRKGTNMRLESYEFLSDFKHGNAVV--LLDYTESGNKGSFIVTQVDGSF 56
>01_01_0588 +
4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 136 FLTYVLVYLTNVCSETNIPIVITTWSFTNSTVKAWEVLNNGGTALDAV 279
F YV + + S I ++++S N+ +K W+ + GG+A DA+
Sbjct: 583 FQGYVYLITQDSLSVVLPSISVSSFSSHNNGIKFWQPTSAGGSACDAL 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,355,265
Number of Sequences: 37544
Number of extensions: 341564
Number of successful extensions: 976
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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