Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17h19
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
 Frame = +1

Query: 334  GGSPDENGETTLD----ALIM-----NGRTMNIGAVGGLRRIKHAISVARHVLDHTKHSF 486
            GG PD+  ET  D    A         G    +G +GGL     A +   H  +   HSF
Sbjct: 1681 GGGPDKIPETAEDISPYATFQLSEGGGGSLAGLGGLGGLGGAAEASAAGLHPNNTLLHSF 1740

Query: 487  LVGELA 504
            +  E A
Sbjct: 1741 MYHEHA 1746


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
 Frame = +1

Query: 334  GGSPDENGETTLD----ALIM-----NGRTMNIGAVGGLRRIKHAISVARHVLDHTKHSF 486
            GG PD+  ET  D    A         G    +G +GGL     A +   H  +   HSF
Sbjct: 1677 GGGPDKIPETAEDISPYATFQLSEGGGGSLAGLGGLGGLGGAAEASAAGLHPNNTLLHSF 1736

Query: 487  LVGELA 504
            +  E A
Sbjct: 1737 MYHEHA 1742


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 341 LPPYPTVPSHCWSSQTDAPCST 276
           L P   + + CW+   D  CST
Sbjct: 149 LTPTERLEALCWTQDEDVICST 170


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 341 LPPYPTVPSHCWSSQTDAPCST 276
           L P   + + CW+   D  CST
Sbjct: 202 LTPTERLEALCWTQDEDIICST 223


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 551 VVRDSS*KPISTANWVASSPTKK 483
           V+   S +PI   NW +  P KK
Sbjct: 141 VIDFESWRPIFRQNWASLQPYKK 163


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 365 VVSPFSSGLPPYPTVPSHCWSS 300
           VV+      PP PTV S C  S
Sbjct: 174 VVASMDPPEPPVPTVTSACVGS 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,558
Number of Sequences: 438
Number of extensions: 3710
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)