Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17h18
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    27   3.3  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   7.6  

>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 535 GDNTLIKCNN*TTNTRCIKLIMHLRFRTKQTCYNIAVTYN 416
           G   L K  N   N +C++++ H  F ++Q   N  VT++
Sbjct: 11  GGIVLWKKTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFD 50


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 651 LITKQIRDSMDSKTFNDVSVDFLI 580
           L +  IR S++SKTFND    FL+
Sbjct: 225 LKSANIRSSLNSKTFNDFRTLFLL 248


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +1

Query: 10  CPTRRTELIMSRIFFLSMLIALRGYFSFSLTCR*AYGPQTGSIASTGPSKSSASQNLPRV 189
           CPT+R  L  +     +  +++    S +  C    G   GS  +   +K S+  N+P++
Sbjct: 563 CPTQRHLLFNTSSTDNTKELSMSAS-SENSDCPHKEGECVGSFCNIN-AKGSSLNNIPKL 620

Query: 190 PRRVPV 207
           PR VPV
Sbjct: 621 PRFVPV 626


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,330
Number of Sequences: 5004
Number of extensions: 47641
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)