Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17h17
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1279 + 27510605-27513301                                         31   0.42 
03_05_0060 + 20363857-20365359                                         30   0.97 
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601...    27   6.8  
07_03_1069 + 23743031-23744062                                         27   9.0  

>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 107 LQTVMSAIRGGCSGCPSPCNSTRNCTPCCSGGS 205
           L TV +A  GGC   P PC S   CTP  +G S
Sbjct: 298 LPTVWAAPTGGCD-LPLPCRSLGLCTPGTNGSS 329


>03_05_0060 + 20363857-20365359
          Length = 500

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 210 IRDPPLQH--GVQFLVELQGDGHPLQPPRIADITVCNLLIA 94
           +R PPL    GV  L  L   GHPL   R+A + + NL +A
Sbjct: 35  LRRPPLDTAVGVTVLQHLMEAGHPLNSTRVARLGLRNLAVA 75


>05_04_0299 -
           19958776-19958858,19958883-19959012,19960131-19960175,
           19960252-19960370,19960450-19960543,19961824-19961985,
           19962117-19962266,19962472-19962537,19962934-19962981,
           19963654-19963866,19963953-19964078,19964155-19964232,
           19964600-19964671,19965522-19965953,19966863-19966925,
           19967497-19967898
          Length = 760

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 202 ISDAVLAIGQPPRPIAAFDKATIAIGHHGRN 294
           +SD+ L +G P + ++ FD   +A+GH  R+
Sbjct: 415 VSDSRLQLGSPNQTLS-FDAVVLAVGHSARD 444


>07_03_1069 + 23743031-23744062
          Length = 343

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 236 GGWPIANTASEI--LRC-STEYNFWWSYRAMGIRCN 138
           G W   +   ++  L+C S +Y F W +RA G  CN
Sbjct: 299 GKWSSVHAPCDVTRLQCESRDYVFAWRFRAAGDECN 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,025,383
Number of Sequences: 37544
Number of extensions: 254586
Number of successful extensions: 889
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)